@prefix dcterms: . @prefix biolink: . @prefix this: . @prefix sub: . @prefix xsd: . @prefix rdf: . @prefix rdfs: . @prefix prov: . @prefix np: . @prefix orcid: . @prefix nt: . @prefix npx: . sub:Head { this: np:hasAssertion sub:assertion; np:hasProvenance sub:provenance; np:hasPublicationInfo sub:pubinfo; a np:Nanopublication . } sub:assertion { sub:assertion a nt:AssertionTemplate; rdfs:label "Defining a biomedical association with its context"; nt:hasStatement sub:st00, sub:st01, sub:st02, sub:st03, sub:st04, sub:st05, sub:st06, sub:st07, sub:st08, sub:st09, sub:st10, sub:st11, sub:st12, sub:st13, sub:st14, sub:st15, sub:st16 . sub:association a nt:LocalResource; rdfs:label "This association" . sub:associationPredicate a nt:GuidedChoicePlaceholder; rdfs:label "search for the association predicate in the BioLink model"; nt:possibleValue biolink:affects, biolink:correlated_with, biolink:interacts_with, biolink:treated_by, biolink:treats; nt:possibleValuesFromApi "http://data.bioontology.org/search?pagesize=20&apikey=fd451bec-eacd-4519-b972-90fb6c7007cb&ontologies=BLM&include_properties=true&q=" . sub:associationRelation a nt:GuidedChoicePlaceholder; rdfs:label "provide the relation between the 2 concepts of the association"; nt:possibleValuesFromApi "https://www.ebi.ac.uk/ols/api/select?q=" . sub:associationType a nt:GuidedChoicePlaceholder; rdfs:label "provide the association class from the BioLink model"; nt:possibleValue biolink:Association, biolink:ChemicalToDiseaseOrPhenotypicFeatureAssociation, biolink:ChemicalToGeneAssociation, biolink:ChemicalToPathwayAssociation, biolink:GeneToDiseaseAssociation, biolink:PairwiseGeneToGeneInteraction; nt:possibleValuesFromApi "http://data.bioontology.org/search?pagesize=20&apikey=fd451bec-eacd-4519-b972-90fb6c7007cb&ontologies=BLM&include_properties=true&q=" . sub:hasDrug1 a nt:GuidedChoicePlaceholder; rdfs:label "provide the drugs used by this target group"; nt:possibleValue sub:object, sub:subject; nt:possibleValuesFromApi "https://name-resolution-sri.renci.org/lookup?limit=10&string=" . sub:hasDrug2 a nt:GuidedChoicePlaceholder; rdfs:label "provide the drugs used by this target group"; nt:possibleValuesFromApi "https://name-resolution-sri.renci.org/lookup?limit=10&string=" . sub:hasPhenotype a nt:GuidedChoicePlaceholder; rdfs:label "provide a URI for the specific phenotype of the target group"; nt:possibleValuesFromApi "https://name-resolution-sri.renci.org/lookup?limit=10&string=" . sub:lifeStage a nt:LocalResource; rdfs:label "The target group life stage" . sub:lifeStageName a nt:LiteralPlaceholder; rdfs:label "describe the life stage or age of the target group" . sub:lifeStageType a nt:GuidedChoicePlaceholder; rdfs:label "provide the life stage of the target group class"; nt:possibleValue biolink:LifeStage; nt:possibleValuesFromApi "http://data.bioontology.org/search?pagesize=20&apikey=fd451bec-eacd-4519-b972-90fb6c7007cb&ontologies=BLM&include_properties=true&q=" . sub:negated a nt:RestrictedChoicePlaceholder; nt:possibleValue xsd:false, xsd:true . sub:object a nt:GuidedChoicePlaceholder; rdfs:label "target biomedical entity"; nt:possibleValuesFromApi "https://name-resolution-sri.renci.org/lookup?limit=10&string=" . sub:objectType a nt:GuidedChoicePlaceholder; rdfs:label "search for the object class in the BioLink model"; nt:possibleValue biolink:ChemicalSubstance, biolink:Disease, biolink:Drug, biolink:Gene, biolink:PhenotypicFeature, biolink:Protein; nt:possibleValuesFromApi "http://data.bioontology.org/search?pagesize=20&apikey=fd451bec-eacd-4519-b972-90fb6c7007cb&ontologies=BLM&include_properties=true&q=" . sub:providedBy a nt:LiteralPlaceholder; rdfs:label "add the URI of the dataset or agent providing the associations" . sub:publication a nt:UriPlaceholder; rdfs:label "add the URI of a publication supporting this association (doi, PubMed, article URL, etc)" . sub:readableassertion a nt:LiteralPlaceholder; rdfs:label "describe the assertion concisely (e.g. tylenol treats pain in adults patients)" . sub:st00 rdf:object sub:readableassertion; rdf:predicate rdfs:label; rdf:subject sub:association; a rdf:Statement; nt:statementOrder "1"^^xsd:integer . sub:st01 rdf:object sub:subject; rdf:predicate rdf:subject; rdf:subject sub:association; a rdf:Statement; nt:statementOrder "2"^^xsd:integer . sub:st02 rdf:object sub:subjectType; rdf:predicate biolink:category; rdf:subject sub:subject; a rdf:Statement; nt:statementOrder "2"^^xsd:integer . sub:st03 rdf:object sub:object; rdf:predicate rdf:object; rdf:subject sub:association; a rdf:Statement; nt:statementOrder "4"^^xsd:integer . sub:st04 rdf:object sub:objectType; rdf:predicate biolink:category; rdf:subject sub:object; a rdf:Statement; nt:statementOrder "2"^^xsd:integer . sub:st05 rdf:object sub:associationType; rdf:predicate biolink:association_type; rdf:subject sub:association; a rdf:Statement; nt:statementOrder "0"^^xsd:integer . sub:st06 rdf:object sub:associationRelation; rdf:predicate biolink:relation; rdf:subject sub:association; a rdf:Statement; nt:statementOrder "1"^^xsd:integer . sub:st07 rdf:object sub:associationPredicate; rdf:predicate rdf:predicate; rdf:subject sub:association; a rdf:Statement; nt:statementOrder "1"^^xsd:integer . sub:st08 rdf:object sub:negated; rdf:predicate biolink:negated; rdf:subject sub:association; a nt:OptionalStatement; nt:statementOrder "6"^^xsd:integer . sub:st09 rdf:object sub:providedBy; rdf:predicate biolink:provided_by; rdf:subject sub:association; a nt:OptionalStatement; nt:statementOrder "7"^^xsd:integer . sub:st10 rdf:object sub:publication; rdf:predicate biolink:publications; rdf:subject sub:association; a nt:OptionalStatement; nt:statementOrder "8"^^xsd:integer . sub:st11 rdf:object sub:lifeStage; rdf:predicate biolink:stage_qualifier; rdf:subject sub:association; a nt:OptionalStatement; nt:statementOrder "13"^^xsd:integer . sub:st12 rdf:object sub:lifeStageType; rdf:predicate rdf:type; rdf:subject sub:lifeStage; a nt:OptionalStatement; nt:statementOrder "13"^^xsd:integer . sub:st13 rdf:object sub:lifeStageName; rdf:predicate rdfs:label; rdf:subject sub:lifeStage; a nt:OptionalStatement; nt:statementOrder "13"^^xsd:integer . sub:st14 rdf:object sub:hasPhenotype; rdf:predicate biolink:has_phenotype; rdf:subject sub:association; a nt:OptionalStatement; nt:statementOrder "12"^^xsd:integer . sub:st15 rdf:object sub:hasDrug1; rdf:predicate biolink:has_drug; rdf:subject sub:association; a nt:OptionalStatement; nt:statementOrder "15"^^xsd:integer . sub:st16 rdf:object sub:hasDrug2; rdf:predicate biolink:has_drug; rdf:subject sub:association; a nt:OptionalStatement; nt:statementOrder "16"^^xsd:integer . sub:subject a nt:GuidedChoicePlaceholder; rdfs:label "source biomedical entity"; nt:possibleValuesFromApi "https://name-resolution-sri.renci.org/lookup?limit=10&string=" . sub:subjectType a nt:GuidedChoicePlaceholder; rdfs:label "search for the subject class in the BioLink model"; nt:possibleValue biolink:ChemicalSubstance, biolink:Disease, biolink:Drug, biolink:Gene, biolink:PhenotypicFeature, biolink:Protein; nt:possibleValuesFromApi "http://data.bioontology.org/search?pagesize=20&apikey=fd451bec-eacd-4519-b972-90fb6c7007cb&ontologies=BLM&include_properties=true&q=" . rdf:object rdfs:label "has object" . rdf:predicate rdfs:label "has predicate" . rdf:subject rdfs:label "has subject" . rdf:type rdfs:label "has type" . rdfs:label rdfs:label "has label" . xsd:false rdfs:label "false" . xsd:true rdfs:label "true" . biolink:association_type rdfs:label "has type" . biolink:category rdfs:label "is a" . biolink:description rdfs:label "is described by" . biolink:has_drug rdfs:label "uses drug" . biolink:has_phenotype rdfs:label "has phenotype" . biolink:id rdfs:label "has id" . biolink:negated rdfs:label "is negated" . biolink:provided_by rdfs:label "is provided by" . biolink:publications rdfs:label "has publications" . biolink:qualifiers rdfs:label "is qualified by" . biolink:relation rdfs:label "has relation" . biolink:stage_qualifier rdfs:label "is qualified by life stage" . } sub:provenance { sub:assertion prov:wasAttributedTo orcid:0000-0003-4727-9435 . } sub:pubinfo { npx:supersedes ""^^xsd:integer . sub:sig npx:hasAlgorithm "RSA"; npx:hasPublicKey "MIGfMA0GCSqGSIb3DQEBAQUAA4GNADCBiQKBgQCR9fz0fKCdWOWC+pxhkQhEM/ppbdIYe5TLSdj+lJzSlv9mYBaPgrzVezSwwbmhlHBPDZa4/vHycU315BdmUGq+pXllp9+rWFfrb+kBJwhZjpG6BeyyXBsRFz4jmQVxl/ZYHilQTh/XalYzKkEAyTiEMPee4Kz61PaWOKH24CsnOQIDAQAB"; npx:hasSignature "elRyYnLLUPMAtzUR0VJg2cNGEzQdGyOxCXWnR3S+gOl1SP1zyBb65zbeCWNbErz6ZhVexvDOZCKCqAWbYNchY6soyT+C6r3lKsrbYnenLJuqq8lTKBlZX493amka5Jt3QRJmVM1JoDMkU3cYh0wXT9JqiTQQyPHMlhgKu8bsJJ4="; npx:hasSignatureTarget this: . this: dcterms:created "2020-11-19T10:00:00+01:00"^^xsd:dateTime; dcterms:creator orcid:0000-0003-4727-9435 . }