[ { "@graph" : [ { "@id" : "http://purl.org/np/RAUYhKjYuuvBBD3jWvz2zwmY-cb0rcfGXOd7xR-9ri2wY", "@type" : [ "http://www.nanopub.org/nschema#Nanopublication" ], "http://www.nanopub.org/nschema#hasAssertion" : [ { "@id" : "http://purl.org/np/RAUYhKjYuuvBBD3jWvz2zwmY-cb0rcfGXOd7xR-9ri2wY#assertion" } ], "http://www.nanopub.org/nschema#hasProvenance" : [ { "@id" : "http://purl.org/np/RAUYhKjYuuvBBD3jWvz2zwmY-cb0rcfGXOd7xR-9ri2wY#provenance" } ], "http://www.nanopub.org/nschema#hasPublicationInfo" : [ { "@id" : "http://purl.org/np/RAUYhKjYuuvBBD3jWvz2zwmY-cb0rcfGXOd7xR-9ri2wY#pubinfo" } ] } ], "@id" : "http://purl.org/np/RAUYhKjYuuvBBD3jWvz2zwmY-cb0rcfGXOd7xR-9ri2wY#Head" }, { "@graph" : [ { "@id" : "http://example.org/lifecyclestage", "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@value" : "refers to organisms of the taxon in life cycle stage" } ] }, { "@id" : "http://purl.org/np/RAUYhKjYuuvBBD3jWvz2zwmY-cb0rcfGXOd7xR-9ri2wY#assertion", "@type" : [ "https://w3id.org/np/o/ntemplate/AssertionTemplate" ], "http://purl.org/dc/terms/description" : [ { "@value" : "

This just a preliminary template for testing...

\r\n\r\n

It uses Biolink for the overall structure.

\r\n\r\n

The subject is a taxon as extracted from Checklistbank.

\r\n\r\n

The life cyle stage is from Uberon.

\r\n\r\n

The predicate is from the Relation Ontology.

\r\n\r\n

The object is a habitat according to the ENVO ontology.

" } ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@value" : "Linking a taxon to a habitat (Biolink/nidx/Uberon/RO/Checklistbank version)" } ], "https://w3id.org/np/o/ntemplate/hasStatement" : [ { "@id" : "http://purl.org/np/RAUYhKjYuuvBBD3jWvz2zwmY-cb0rcfGXOd7xR-9ri2wY#st1" }, { "@id" : "http://purl.org/np/RAUYhKjYuuvBBD3jWvz2zwmY-cb0rcfGXOd7xR-9ri2wY#st2" }, { "@id" : "http://purl.org/np/RAUYhKjYuuvBBD3jWvz2zwmY-cb0rcfGXOd7xR-9ri2wY#st3" }, { "@id" : "http://purl.org/np/RAUYhKjYuuvBBD3jWvz2zwmY-cb0rcfGXOd7xR-9ri2wY#st4" } ], "https://w3id.org/np/o/ntemplate/hasTag" : [ { "@value" : "Biodiversity" } ] }, { "@id" : "http://purl.org/np/RAUYhKjYuuvBBD3jWvz2zwmY-cb0rcfGXOd7xR-9ri2wY#association", "@type" : [ "https://w3id.org/np/o/ntemplate/IntroducedResource", "https://w3id.org/np/o/ntemplate/LocalResource" ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@value" : "this association" } ] }, { "@id" : "http://purl.org/np/RAUYhKjYuuvBBD3jWvz2zwmY-cb0rcfGXOd7xR-9ri2wY#habitat", "@type" : [ "https://w3id.org/np/o/ntemplate/GuidedChoicePlaceholder" ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@value" : "habitat related to taxon" } ], "https://w3id.org/np/o/ntemplate/possibleValuesFromApi" : [ { "@value" : "https://www.ebi.ac.uk/ols/api/select?ontology=envo&fieldList=iri,label,description&q=" } ] }, { "@id" : "http://purl.org/np/RAUYhKjYuuvBBD3jWvz2zwmY-cb0rcfGXOd7xR-9ri2wY#lifecyclestage", "@type" : [ "https://w3id.org/np/o/ntemplate/GuidedChoicePlaceholder" ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@value" : "identifier of the life cycle stage" } ], "https://w3id.org/np/o/ntemplate/possibleValuesFromApi" : [ { "@value" : "https://www.ebi.ac.uk/ols/api/select?ontology=uberon&fieldList=iri,label,description&childrenOf=http://purl.obolibrary.org/obo/UBERON_0000105&q=" } ] }, { "@id" : "http://purl.org/np/RAUYhKjYuuvBBD3jWvz2zwmY-cb0rcfGXOd7xR-9ri2wY#relation", "@type" : [ "https://w3id.org/np/o/ntemplate/GuidedChoicePlaceholder" ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@value" : "identifier of relation" } ], "https://w3id.org/np/o/ntemplate/possibleValuesFromApi" : [ { "@value" : "https://www.ebi.ac.uk/ols/api/select?ontology=ro&fieldList=iri,label,description&q=" } ] }, { "@id" : "http://purl.org/np/RAUYhKjYuuvBBD3jWvz2zwmY-cb0rcfGXOd7xR-9ri2wY#st0", "http://www.w3.org/1999/02/22-rdf-syntax-ns#object" : [ { "@id" : "https://w3id.org/biolink/vocab/OrganismTaxonToEnvironmentAssociation" } ], "http://www.w3.org/1999/02/22-rdf-syntax-ns#predicate" : [ { "@id" : "http://www.w3.org/1999/02/22-rdf-syntax-ns#type" } ], "http://www.w3.org/1999/02/22-rdf-syntax-ns#subject" : [ { "@id" : "http://purl.org/np/RAUYhKjYuuvBBD3jWvz2zwmY-cb0rcfGXOd7xR-9ri2wY#association" } ] }, { "@id" : "http://purl.org/np/RAUYhKjYuuvBBD3jWvz2zwmY-cb0rcfGXOd7xR-9ri2wY#st1", "http://www.w3.org/1999/02/22-rdf-syntax-ns#object" : [ { "@id" : "http://purl.org/np/RAUYhKjYuuvBBD3jWvz2zwmY-cb0rcfGXOd7xR-9ri2wY#taxon" } ], "http://www.w3.org/1999/02/22-rdf-syntax-ns#predicate" : [ { "@id" : "https://w3id.org/biolink/vocab/subject" } ], "http://www.w3.org/1999/02/22-rdf-syntax-ns#subject" : [ { "@id" : "http://purl.org/np/RAUYhKjYuuvBBD3jWvz2zwmY-cb0rcfGXOd7xR-9ri2wY#association" } ] }, { "@id" : "http://purl.org/np/RAUYhKjYuuvBBD3jWvz2zwmY-cb0rcfGXOd7xR-9ri2wY#st2", "@type" : [ "https://w3id.org/np/o/ntemplate/OptionalStatement" ], "http://www.w3.org/1999/02/22-rdf-syntax-ns#object" : [ { "@id" : "http://purl.org/np/RAUYhKjYuuvBBD3jWvz2zwmY-cb0rcfGXOd7xR-9ri2wY#lifecyclestage" } ], "http://www.w3.org/1999/02/22-rdf-syntax-ns#predicate" : [ { "@id" : "http://example.org/lifecyclestage" } ], "http://www.w3.org/1999/02/22-rdf-syntax-ns#subject" : [ { "@id" : "http://purl.org/np/RAUYhKjYuuvBBD3jWvz2zwmY-cb0rcfGXOd7xR-9ri2wY#association" } ] }, { "@id" : "http://purl.org/np/RAUYhKjYuuvBBD3jWvz2zwmY-cb0rcfGXOd7xR-9ri2wY#st3", "http://www.w3.org/1999/02/22-rdf-syntax-ns#object" : [ { "@id" : "http://purl.org/np/RAUYhKjYuuvBBD3jWvz2zwmY-cb0rcfGXOd7xR-9ri2wY#relation" } ], "http://www.w3.org/1999/02/22-rdf-syntax-ns#predicate" : [ { "@id" : "https://w3id.org/biolink/vocab/predicate" } ], "http://www.w3.org/1999/02/22-rdf-syntax-ns#subject" : [ { "@id" : "http://purl.org/np/RAUYhKjYuuvBBD3jWvz2zwmY-cb0rcfGXOd7xR-9ri2wY#association" } ] }, { "@id" : "http://purl.org/np/RAUYhKjYuuvBBD3jWvz2zwmY-cb0rcfGXOd7xR-9ri2wY#st4", "http://www.w3.org/1999/02/22-rdf-syntax-ns#object" : [ { "@id" : "http://purl.org/np/RAUYhKjYuuvBBD3jWvz2zwmY-cb0rcfGXOd7xR-9ri2wY#habitat" } ], "http://www.w3.org/1999/02/22-rdf-syntax-ns#predicate" : [ { "@id" : "https://w3id.org/biolink/vocab/object" } ], "http://www.w3.org/1999/02/22-rdf-syntax-ns#subject" : [ { "@id" : "http://purl.org/np/RAUYhKjYuuvBBD3jWvz2zwmY-cb0rcfGXOd7xR-9ri2wY#association" } ] }, { "@id" : "http://purl.org/np/RAUYhKjYuuvBBD3jWvz2zwmY-cb0rcfGXOd7xR-9ri2wY#taxon", "@type" : [ "https://w3id.org/np/o/ntemplate/GuidedChoicePlaceholder" ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@value" : "identifier of taxon" } ], "https://w3id.org/np/o/ntemplate/possibleValuesFromApi" : [ { "@value" : "https://vodex.petapico.org/nidx/query?q=label:" } ] }, { "@id" : "http://www.w3.org/1999/02/22-rdf-syntax-ns#type", "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@value" : "is a" } ] }, { "@id" : "https://w3id.org/biolink/vocab/OrganismTaxonToEnvironmentAssociation", "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@value" : "association of an organism taxon to an environment" } ] }, { "@id" : "https://w3id.org/biolink/vocab/object", "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@value" : "refers to the environment" } ] }, { "@id" : "https://w3id.org/biolink/vocab/predicate", "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@value" : "refers to the relation (between taxon and environment)" } ] }, { "@id" : "https://w3id.org/biolink/vocab/subject", "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@value" : "refers to the organism taxon" } ] } ], "@id" : "http://purl.org/np/RAUYhKjYuuvBBD3jWvz2zwmY-cb0rcfGXOd7xR-9ri2wY#assertion" }, { "@graph" : [ { "@id" : "http://purl.org/np/RAUYhKjYuuvBBD3jWvz2zwmY-cb0rcfGXOd7xR-9ri2wY#assertion", "http://www.w3.org/ns/prov#wasAttributedTo" : [ { "@id" : "https://orcid.org/0000-0002-1267-0234" } ] } ], "@id" : "http://purl.org/np/RAUYhKjYuuvBBD3jWvz2zwmY-cb0rcfGXOd7xR-9ri2wY#provenance" }, { "@graph" : [ { "@id" : "http://purl.org/np/RAUYhKjYuuvBBD3jWvz2zwmY-cb0rcfGXOd7xR-9ri2wY", "http://purl.org/dc/terms/created" : [ { "@type" : "http://www.w3.org/2001/XMLSchema#dateTime", "@value" : "2023-04-25T07:02:46.130Z" } ], "http://purl.org/dc/terms/creator" : [ { "@id" : "https://orcid.org/0000-0002-1267-0234" } ], "https://w3id.org/np/o/ntemplate/wasCreatedFromProvenanceTemplate" : [ { "@id" : 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