http://purl.org/np/RAYiQ_XN8D2NiEG_nswWXZA-eXYSsgC14480c-Gvr_FVI#Head
http://purl.org/np/RAYiQ_XN8D2NiEG_nswWXZA-eXYSsgC14480c-Gvr_FVI
http://www.nanopub.org/nschema#hasAssertion
http://purl.org/np/RAYiQ_XN8D2NiEG_nswWXZA-eXYSsgC14480c-Gvr_FVI#assertion
http://purl.org/np/RAYiQ_XN8D2NiEG_nswWXZA-eXYSsgC14480c-Gvr_FVI
http://www.nanopub.org/nschema#hasProvenance
http://purl.org/np/RAYiQ_XN8D2NiEG_nswWXZA-eXYSsgC14480c-Gvr_FVI#provenance
http://purl.org/np/RAYiQ_XN8D2NiEG_nswWXZA-eXYSsgC14480c-Gvr_FVI
http://www.nanopub.org/nschema#hasPublicationInfo
http://purl.org/np/RAYiQ_XN8D2NiEG_nswWXZA-eXYSsgC14480c-Gvr_FVI#pubinfo
http://purl.org/np/RAYiQ_XN8D2NiEG_nswWXZA-eXYSsgC14480c-Gvr_FVI
http://www.w3.org/1999/02/22-rdf-syntax-ns#type
http://www.nanopub.org/nschema#Nanopublication
http://purl.org/np/RAYiQ_XN8D2NiEG_nswWXZA-eXYSsgC14480c-Gvr_FVI#assertion
https://w3id.org/biolink/vocab/actively_involved_in
http://www.w3.org/2000/01/rdf-schema#label
actively involved in - holds between a continuant and a process or function, where the continuant actively contributes to part or all of the process or function it realizes
https://w3id.org/biolink/vocab/affected_by
http://www.w3.org/2000/01/rdf-schema#label
affected by - describes an entity of which the state or quality is affected by another existing entity.
https://w3id.org/biolink/vocab/affects
http://www.w3.org/2000/01/rdf-schema#label
affects - describes an entity that has a direct affect on the state or quality of another existing entity. Use of the 'affects' predicate implies that the affected entity already exists, unlike predicates such as 'affects risk for' and 'prevents, where the outcome is something that may or may not come to be.
https://w3id.org/biolink/vocab/affects_risk_for
http://www.w3.org/2000/01/rdf-schema#label
affects risk for - holds between two entities where exposure to one entity alters the chance of developing the other
https://w3id.org/biolink/vocab/ameliorates
http://www.w3.org/2000/01/rdf-schema#label
ameliorates - A relationship between an entity (e.g. a genotype, genetic variation, chemical, or environmental exposure, clinical intervention) and a condition (a phenotype or disease), where the presence of the entity reduces or eliminates some or all aspects of the condition.
https://w3id.org/biolink/vocab/assesses
http://www.w3.org/2000/01/rdf-schema#label
assesses - The effect of a thing on a target was interrogated in some assay. A relationship between some perturbing agent (usually a chemical compound) and some target entity, where the affect of the perturbing agent on the target entity was interrogated in a particular assay. The target might be a particular protein, tissue, phenotype, whole organism, cell line, or other type of biological entity.
https://w3id.org/biolink/vocab/associated_with
http://www.w3.org/2000/01/rdf-schema#label
associated with - Expresses a relationship between two named things where the relationship is typically generated statistically (though not in all cases), and is weaker than its child, 'correlated with', but stronger than its parent, 'related to'. This relationship holds between two concepts represented by variables for which a statistical dependence is demonstrated. E.g. the statement “Atrial Fibrillation (Afib) is associated with Myocardial Infarction (MI)” asserts that having Afib is not statistically independent from whether a patient will also have MI. Note that in Translator associations, the subject and object concepts may map exactly to the statistical variables, or represent related entities for which the variables serve as proxies in an Association (e.g. diseases, chemical entities or processes).
https://w3id.org/biolink/vocab/associated_with_decreased_likelihood_of
http://www.w3.org/2000/01/rdf-schema#label
associated with decreased likelihood of - Expresses a relationship between two named things where the relationship is typically generated statistically and the state or fact of something is less probable.
https://w3id.org/biolink/vocab/associated_with_increased_likelihood_of
http://www.w3.org/2000/01/rdf-schema#label
associated with increased likelihood of - Expresses a relationship between two named things where the relationship is typically generated statistically and the state or fact of something is more probable.
https://w3id.org/biolink/vocab/associated_with_likelihood_of
http://www.w3.org/2000/01/rdf-schema#label
associated with likelihood of - A a relationship that holds between two concepts represented by variables for which a statistical dependence is demonstrated, wherein the state or value of one variable predicts the future state or value of the other. E.g. the statement “An Atrial Fibrillation (Afib) diagnosis is associated with likelihood of a Myocardial Infarction (MI) diagnosis” asserts that the state of having Afib is associated with an increased or decreased likelihood that a patient will later exhibit MI.
https://w3id.org/biolink/vocab/associated_with_resistance_to
http://www.w3.org/2000/01/rdf-schema#label
associated with resistance to - A relation that holds between a named thing and a chemical that specifies that the change in the named thing is found to be associated with the degree of resistance to treatment by the chemical.
https://w3id.org/biolink/vocab/associated_with_sensitivity_to
http://www.w3.org/2000/01/rdf-schema#label
associated with sensitivity to - A relation that holds between a named thing and a chemical that specifies that the change in the named thing is found to be associated with the degree of sensitivity to treatment by the chemical.
https://w3id.org/biolink/vocab/author
http://www.w3.org/2000/01/rdf-schema#label
author - an instance of one (co-)creator primarily responsible for a written work
https://w3id.org/biolink/vocab/binds
http://www.w3.org/2000/01/rdf-schema#label
binds - A causal mechanism mediated by the direct contact between effector and target chemical or biomolecular entity, which form a stable physical interaction.
https://w3id.org/biolink/vocab/biomarker_for
http://www.w3.org/2000/01/rdf-schema#label
biomarker for - holds between a measurable chemical entity and a disease or phenotypic feature, where the entity is used as an indicator of the presence or state of the disease or feature.
https://w3id.org/biolink/vocab/broad_match
http://www.w3.org/2000/01/rdf-schema#label
broad match - a list of terms from different schemas or terminology systems that have a broader, more general meaning. Broader terms are typically shown as parents in a hierarchy or tree.
https://w3id.org/biolink/vocab/capable_of
http://www.w3.org/2000/01/rdf-schema#label
capable of - holds between a physical entity and process or function, where the continuant alone has the ability to carry out the process or function.
https://w3id.org/biolink/vocab/caused_by
http://www.w3.org/2000/01/rdf-schema#label
caused by - holds between two entities where the occurrence, existence, or activity of one is caused by the occurrence or generation of the other
https://w3id.org/biolink/vocab/causes
http://www.w3.org/2000/01/rdf-schema#label
causes - holds between two entities where the occurrence, existence, or activity of one causes the occurrence or generation of the other
https://w3id.org/biolink/vocab/chemically_similar_to
http://www.w3.org/2000/01/rdf-schema#label
chemically similar to - holds between one small molecule entity and another that it approximates for purposes of scientific study, in virtue of its exhibiting similar features of the studied entity.
https://w3id.org/biolink/vocab/close_match
http://www.w3.org/2000/01/rdf-schema#label
close match - a list of terms from different schemas or terminology systems that have a semantically similar but not strictly equivalent, broader, or narrower meaning. Such terms often describe the same general concept from different ontological perspectives (e.g. drug as a type of chemical entity versus drug as a type of role borne by a chemical entity).
https://w3id.org/biolink/vocab/coexists_with
http://www.w3.org/2000/01/rdf-schema#label
coexists with - holds between two entities that are co-located in the same aggregate object, process, or spatio-temporal region
https://w3id.org/biolink/vocab/coexpressed_with
http://www.w3.org/2000/01/rdf-schema#label
coexpressed with - holds between any two genes or gene products, in which both are generally expressed within a single defined experimental context.
https://w3id.org/biolink/vocab/colocalizes_with
http://www.w3.org/2000/01/rdf-schema#label
colocalizes with - holds between two entities that are observed to be located in the same place.
https://w3id.org/biolink/vocab/composed_primarily_of
http://www.w3.org/2000/01/rdf-schema#label
composed primarily of - x composed_primarily_of_y if:more than half of the mass of x is made from parts of y.
https://w3id.org/biolink/vocab/condition_associated_with_gene
http://www.w3.org/2000/01/rdf-schema#label
condition associated with gene - holds between a gene and a disease or phenotypic feature that may be influenced, contribute to, or be correlated with the gene or its alleles/products
https://w3id.org/biolink/vocab/contraindicated_for
http://www.w3.org/2000/01/rdf-schema#label
contraindicated for - Holds between a drug and a disease or phenotype, such that a person with that disease should not be treated with the drug.
https://w3id.org/biolink/vocab/contributes_to
http://www.w3.org/2000/01/rdf-schema#label
contributes to - holds between two entities where the occurrence, existence, or activity of one causes or contributes to the occurrence or generation of the other
https://w3id.org/biolink/vocab/correlated_with
http://www.w3.org/2000/01/rdf-schema#label
correlated with - A relationship that holds between two concepts represented by variables for which a statistical dependence is demonstrated using a correlation analysis method.
https://w3id.org/biolink/vocab/decreased_likelihood_associated_with
http://www.w3.org/2000/01/rdf-schema#label
decreased likelihood associated with -
https://w3id.org/biolink/vocab/decreases_amount_or_activity_of
http://www.w3.org/2000/01/rdf-schema#label
decreases amount or activity of - A grouping mixin to help with searching for all the predicates that decrease the amount or activity of the object.
https://w3id.org/biolink/vocab/decreases_response_to
http://www.w3.org/2000/01/rdf-schema#label
decreases response to - holds between two chemical entities where the action or effect of one decreases the susceptibility of a biological entity or system (e.g. an organism, cell, cellular component, macromolecular machine mixin, biological or pathological process) to the other
https://w3id.org/biolink/vocab/derives_from
http://www.w3.org/2000/01/rdf-schema#label
derives from - holds between two distinct material entities, the new entity and the old entity, in which the new entity begins to exist when the old entity ceases to exist, and the new entity inherits the significant portion of the matter of the old entity
https://w3id.org/biolink/vocab/derives_into
http://www.w3.org/2000/01/rdf-schema#label
derives into - holds between two distinct material entities, the old entity and the new entity, in which the new entity begins to exist when the old entity ceases to exist, and the new entity inherits the significant portion of the matter of the old entity
https://w3id.org/biolink/vocab/diagnoses
http://www.w3.org/2000/01/rdf-schema#label
diagnoses - a relationship that identifies the nature of (an illness or other problem) by examination of the symptoms.
https://w3id.org/biolink/vocab/directly_physically_interacts_with
http://www.w3.org/2000/01/rdf-schema#label
directly physically interacts with - A causal mechanism mediated by a direct contact between the effector and target entities (this contact may be weak or strong, transient or stable).
https://w3id.org/biolink/vocab/disease_has_basis_in
http://www.w3.org/2000/01/rdf-schema#label
disease has basis in - A relation that holds between a disease and an entity where the state of the entity has contribution to the disease.
https://w3id.org/biolink/vocab/disease_has_location
http://www.w3.org/2000/01/rdf-schema#label
disease has location - A relationship between a disease and an anatomical entity where the disease has one or more features that are located in that entity.
https://w3id.org/biolink/vocab/disrupted_by
http://www.w3.org/2000/01/rdf-schema#label
disrupted by - describes a relationship where the structure, function, or occurrence of one entity is degraded or interfered with by another.
https://w3id.org/biolink/vocab/disrupts
http://www.w3.org/2000/01/rdf-schema#label
disrupts - describes a relationship where one entity degrades or interferes with the structure, function, or occurrence of another.
https://w3id.org/biolink/vocab/editor
http://www.w3.org/2000/01/rdf-schema#label
editor - editor of a compiled work such as a book or a periodical (newspaper or an academic journal). Note that in the case of publications which have a containing "published in" node property, the editor association may not be attached directly to the embedded child publication, but only made in between the parent's publication node and the editorial agent of the encompassing publication (e.g. only from the Book referenced by the 'published_in' property of a book chapter Publication node).
https://w3id.org/biolink/vocab/enabled_by
http://www.w3.org/2000/01/rdf-schema#label
enabled by - holds between a process and a physical entity, where the physical entity executes the process
https://w3id.org/biolink/vocab/enables
http://www.w3.org/2000/01/rdf-schema#label
enables - holds between a physical entity and a process, where the physical entity executes the process
https://w3id.org/biolink/vocab/exacerbates
http://www.w3.org/2000/01/rdf-schema#label
exacerbates - A relationship between an entity (e.g. a chemical, environmental exposure, or some form of genetic variation) and a condition (a phenotype or disease), where the presence of the entity worsens some or all aspects of the condition.
https://w3id.org/biolink/vocab/exact_match
http://www.w3.org/2000/01/rdf-schema#label
exact match - holds between two entities that have strictly equivalent meanings, with a high degree of confidence
https://w3id.org/biolink/vocab/expressed_in
http://www.w3.org/2000/01/rdf-schema#label
expressed in - holds between a gene or gene product and an anatomical entity in which it is expressed
https://w3id.org/biolink/vocab/expresses
http://www.w3.org/2000/01/rdf-schema#label
expresses - holds between an anatomical entity and gene or gene product that is expressed there
https://w3id.org/biolink/vocab/food_component_of
http://www.w3.org/2000/01/rdf-schema#label
food component of - holds between a one or more chemical entities present in food, irrespective of nutritional value (i.e. could also be a contaminant or additive)
https://w3id.org/biolink/vocab/gene_associated_with_condition
http://www.w3.org/2000/01/rdf-schema#label
gene associated with condition - holds between a gene and a disease or phenotypic feature that the gene or its alleles/products may influence, contribute to, or correlate with
https://w3id.org/biolink/vocab/gene_fusion_with
http://www.w3.org/2000/01/rdf-schema#label
gene fusion with - holds between two independent genes that have fused through translocation, interstitial deletion, or chromosomal inversion to form a new, hybrid gene. Fusion genes are often implicated in various neoplasms and cancers.
https://w3id.org/biolink/vocab/gene_product_of
http://www.w3.org/2000/01/rdf-schema#label
gene product of - definition x has gene product of y if and only if y is a gene (SO:0000704) that participates in some gene expression process (GO:0010467) where the output of thatf process is either y or something that is ribosomally translated from x
https://w3id.org/biolink/vocab/genetic_association
http://www.w3.org/2000/01/rdf-schema#label
genetic association - Co-occurrence of a certain allele of a genetic marker and the phenotype of interest in the same individuals at above-chance level
https://w3id.org/biolink/vocab/genetic_neighborhood_of
http://www.w3.org/2000/01/rdf-schema#label
genetic neighborhood of - holds between two genes located nearby one another on a chromosome.
https://w3id.org/biolink/vocab/genetically_interacts_with
http://www.w3.org/2000/01/rdf-schema#label
genetically interacts with - holds between two genes whose phenotypic effects are dependent on each other in some way - such that their combined phenotypic effects are the result of some interaction between the activity of their gene products. Examples include epistasis and synthetic lethality.
https://w3id.org/biolink/vocab/has_active_ingredient
http://www.w3.org/2000/01/rdf-schema#label
has active ingredient - holds between a drug and a molecular entity in which the latter is a part of the former, and is a biologically active component
https://w3id.org/biolink/vocab/has_adverse_event
http://www.w3.org/2000/01/rdf-schema#label
has adverse event - An untoward medical occurrence in a patient or clinical investigation subject that happens during treatment with a therapeutic agent. Adverse events may be caused by something other than the drug or therapy being given and may include abnormal laboratory finding, symptoms, or diseases temporally associated with the treatment, whether or not considered related to the treatment. Adverse events are unintended effects that occur when a medication is administered correctly.
https://w3id.org/biolink/vocab/has_biomarker
http://www.w3.org/2000/01/rdf-schema#label
has biomarker - holds between a disease or phenotypic feature and a measurable chemical entity that is used as an indicator of the presence or state of the disease or feature. # metabolite
https://w3id.org/biolink/vocab/has_chemical_role
http://www.w3.org/2000/01/rdf-schema#label
has chemical role - A role is particular behaviour which a chemical entity may exhibit.
https://w3id.org/biolink/vocab/has_completed
http://www.w3.org/2000/01/rdf-schema#label
has completed - holds between an entity and a process that the entity is capable of and has completed
https://w3id.org/biolink/vocab/has_excipient
http://www.w3.org/2000/01/rdf-schema#label
has excipient - holds between a drug and a molecular entities in which the latter is a part of the former, and is a biologically inactive component
https://w3id.org/biolink/vocab/has_food_component
http://www.w3.org/2000/01/rdf-schema#label
has food component - holds between food and one or more chemical entities composing it, irrespective of nutritional value (i.e. could also be a contaminant or additive)
https://w3id.org/biolink/vocab/has_gene_product
http://www.w3.org/2000/01/rdf-schema#label
has gene product - holds between a gene and a transcribed and/or translated product generated from it
https://w3id.org/biolink/vocab/has_input
http://www.w3.org/2000/01/rdf-schema#label
has input - holds between a process and a continuant, where the continuant is an input into the process
https://w3id.org/biolink/vocab/has_member
http://www.w3.org/2000/01/rdf-schema#label
has member - Defines a mereological relation between a collection and an item.
https://w3id.org/biolink/vocab/has_metabolite
http://www.w3.org/2000/01/rdf-schema#label
has metabolite - holds between two molecular entities in which the second one is derived from the first one as a product of metabolism
https://w3id.org/biolink/vocab/has_mode_of_inheritance
http://www.w3.org/2000/01/rdf-schema#label
has mode of inheritance - Relates a disease or phenotypic feature to its observed genetic segregation and assumed associated underlying DNA manifestation (i.e. autosomal, sex or mitochondrial chromosome).
https://w3id.org/biolink/vocab/has_molecular_consequence
http://www.w3.org/2000/01/rdf-schema#label
has molecular consequence - connects a sequence variant to a class describing the molecular consequence. E.g. SO:0001583
https://w3id.org/biolink/vocab/has_not_completed
http://www.w3.org/2000/01/rdf-schema#label
has not completed - holds between an entity and a process that the entity is capable of, but has not completed
https://w3id.org/biolink/vocab/has_nutrient
http://www.w3.org/2000/01/rdf-schema#label
has nutrient - one or more nutrients which are growth factors for a living organism
https://w3id.org/biolink/vocab/has_output
http://www.w3.org/2000/01/rdf-schema#label
has output - holds between a process and a continuant, where the continuant is an output of the process
https://w3id.org/biolink/vocab/has_part
http://www.w3.org/2000/01/rdf-schema#label
has part - holds between wholes and their parts (material entities or processes)
https://w3id.org/biolink/vocab/has_participant
http://www.w3.org/2000/01/rdf-schema#label
has participant - holds between a process and a continuant, where the continuant is somehow involved in the process
https://w3id.org/biolink/vocab/has_phenotype
http://www.w3.org/2000/01/rdf-schema#label
has phenotype - holds between a biological entity and a phenotype, where a phenotype is construed broadly as any kind of quality of an organism part, a collection of these qualities, or a change in quality or qualities (e.g. abnormally increased temperature). In SNOMEDCT, disorders with keyword 'characterized by' should translate into this predicate.
https://w3id.org/biolink/vocab/has_plasma_membrane_part
http://www.w3.org/2000/01/rdf-schema#label
has plasma membrane part - Holds between a cell c and a protein complex or protein p if and only if that cell has as part a plasma_membrane[GO:0005886], and that plasma membrane has p as part.
https://w3id.org/biolink/vocab/has_sequence_location
http://www.w3.org/2000/01/rdf-schema#label
has sequence location - holds between two nucleic acid entities when the subject can be localized in sequence coordinates on the object. For example, between an exon and a chromosome/contig.
https://w3id.org/biolink/vocab/has_side_effect
http://www.w3.org/2000/01/rdf-schema#label
has side effect - An unintended, but predictable, secondary effect shown to be correlated with a therapeutic agent, drug or treatment. Side effects happen at normal, recommended doses or treatments, and are unrelated to the intended purpose of the medication.
https://w3id.org/biolink/vocab/has_variant_part
http://www.w3.org/2000/01/rdf-schema#label
has variant part - holds between a nucleic acid entity and a nucleic acid entity that is a sub-component of it
https://w3id.org/biolink/vocab/homologous_to
http://www.w3.org/2000/01/rdf-schema#label
homologous to - holds between two biological entities that have common evolutionary origin
https://w3id.org/biolink/vocab/in_cell_population_with
http://www.w3.org/2000/01/rdf-schema#label
in cell population with - holds between two genes or gene products that are expressed in the same cell type or population
https://w3id.org/biolink/vocab/in_complex_with
http://www.w3.org/2000/01/rdf-schema#label
in complex with - holds between two genes or gene products that are part of (or code for products that are part of) in the same macromolecular complex
https://w3id.org/biolink/vocab/in_linkage_disequilibrium_with
http://www.w3.org/2000/01/rdf-schema#label
in linkage disequilibrium with - holds between two sequence variants, the presence of which are correlated in a population
https://w3id.org/biolink/vocab/in_pathway_with
http://www.w3.org/2000/01/rdf-schema#label
in pathway with - holds between two genes or gene products that are part of in the same biological pathway
https://w3id.org/biolink/vocab/in_taxon
http://www.w3.org/2000/01/rdf-schema#label
in taxon - connects an entity to its taxonomic classification. Only certain kinds of entities can be taxonomically classified; see 'thing with taxon'
https://w3id.org/biolink/vocab/increased_likelihood_associated_with
http://www.w3.org/2000/01/rdf-schema#label
increased likelihood associated with -
https://w3id.org/biolink/vocab/increases_amount_or_activity_of
http://www.w3.org/2000/01/rdf-schema#label
increases amount or activity of - A grouping mixin to help with searching for all the predicates that increase the amount or activity of the object.
https://w3id.org/biolink/vocab/increases_response_to
http://www.w3.org/2000/01/rdf-schema#label
increases response to - holds between two chemical entities where the action or effect of one increases the susceptibility of a biological entity or system (e.g. an organism, cell, cellular component, macromolecular machine mixin, biological or pathological process) to the other
https://w3id.org/biolink/vocab/interacts_with
http://www.w3.org/2000/01/rdf-schema#label
interacts with - holds between any two entities that directly or indirectly interact with each other
https://w3id.org/biolink/vocab/is_active_ingredient_of
http://www.w3.org/2000/01/rdf-schema#label
is active ingredient of - holds between a molecular entity and a drug, in which the former is a part of the latter, and is a biologically active component
https://w3id.org/biolink/vocab/is_excipient_of
http://www.w3.org/2000/01/rdf-schema#label
is excipient of - holds between a molecular entity and a drug in which the former is a part of the latter, and is a biologically inactive component
https://w3id.org/biolink/vocab/is_frameshift_variant_of
http://www.w3.org/2000/01/rdf-schema#label
is frameshift variant of - holds between a sequence variant and a gene, such the sequence variant causes a disruption of the translational reading frame, because the number of nucleotides inserted or deleted is not a multiple of three.
https://w3id.org/biolink/vocab/is_metabolite_of
http://www.w3.org/2000/01/rdf-schema#label
is metabolite of - holds between two molecular entities in which the first one is derived from the second one as a product of metabolism
https://w3id.org/biolink/vocab/is_missense_variant_of
http://www.w3.org/2000/01/rdf-schema#label
is missense variant of - holds between a gene and a sequence variant, such the sequence variant results in a different amino acid sequence but where the length is preserved.
https://w3id.org/biolink/vocab/is_nearby_variant_of
http://www.w3.org/2000/01/rdf-schema#label
is nearby variant of - holds between a sequence variant and a gene sequence that the variant is genomically close to.
https://w3id.org/biolink/vocab/is_non_coding_variant_of
http://www.w3.org/2000/01/rdf-schema#label
is non coding variant of - holds between a sequence variant and a gene, where the variant does not affect the coding sequence
https://w3id.org/biolink/vocab/is_nonsense_variant_of
http://www.w3.org/2000/01/rdf-schema#label
is nonsense variant of - holds between a sequence variant and a gene, such the sequence variant results in a premature stop codon
https://w3id.org/biolink/vocab/is_sequence_variant_of
http://www.w3.org/2000/01/rdf-schema#label
is sequence variant of - holds between a sequence variant and a nucleic acid entity
https://w3id.org/biolink/vocab/is_splice_site_variant_of
http://www.w3.org/2000/01/rdf-schema#label
is splice site variant of - holds between a sequence variant and a gene, such the sequence variant is in the canonical splice site of one of the gene's exons.
https://w3id.org/biolink/vocab/is_synonymous_variant_of
http://www.w3.org/2000/01/rdf-schema#label
is synonymous variant of - holds between a sequence variant and a gene, such the sequence variant is in the coding sequence of the gene, but results in the same amino acid sequence
https://w3id.org/biolink/vocab/likelihood_associated_with
http://www.w3.org/2000/01/rdf-schema#label
likelihood associated with -
https://w3id.org/biolink/vocab/located_in
http://www.w3.org/2000/01/rdf-schema#label
located in - holds between a material entity and a material entity or site within which it is located (but of which it is not considered a part)
https://w3id.org/biolink/vocab/location_of
http://www.w3.org/2000/01/rdf-schema#label
location of - holds between material entity or site and a material entity that is located within it (but not considered a part of it)
https://w3id.org/biolink/vocab/manifestation_of
http://www.w3.org/2000/01/rdf-schema#label
manifestation of - that part of a phenomenon which is directly observable or visibly expressed, or which gives evidence to the underlying process; used in SemMedDB for linking things like dysfunctions and processes to some disease or syndrome
https://w3id.org/biolink/vocab/member_of
http://www.w3.org/2000/01/rdf-schema#label
member of - Defines a mereological relation between a item and a collection.
https://w3id.org/biolink/vocab/mentioned_by
http://www.w3.org/2000/01/rdf-schema#label
mentioned by - refers to is a relation between one named thing and the information content entity that it makes reference to.
https://w3id.org/biolink/vocab/mentions
http://www.w3.org/2000/01/rdf-schema#label
mentions - refers to is a relation between one information content entity and the named thing that it makes reference to.
https://w3id.org/biolink/vocab/model_of
http://www.w3.org/2000/01/rdf-schema#label
model of - holds between a thing and some other thing it approximates for purposes of scientific study, in virtue of its exhibiting similar features of the studied entity.
https://w3id.org/biolink/vocab/molecular_activity_enabled_by
http://www.w3.org/2000/01/rdf-schema#label
molecular activity enabled by - The gene product, gene, or complex that catalyzes the reaction
https://w3id.org/biolink/vocab/molecular_activity_has_input
http://www.w3.org/2000/01/rdf-schema#label
molecular activity has input - A chemical entity that is the input for the reaction
https://w3id.org/biolink/vocab/molecular_activity_has_output
http://www.w3.org/2000/01/rdf-schema#label
molecular activity has output - A chemical entity that is the output for the reaction
https://w3id.org/biolink/vocab/narrow_match
http://www.w3.org/2000/01/rdf-schema#label
narrow match - a list of terms from different schemas or terminology systems that have a narrower, more specific meaning. Narrower terms are typically shown as children in a hierarchy or tree.
https://w3id.org/biolink/vocab/negatively_correlated_with
http://www.w3.org/2000/01/rdf-schema#label
negatively correlated with - A relationship that holds between two concepts represented by variables for which a statistical correlation is demonstrated, wherein variable values move in opposite directions (i.e. increased in one or presence of one correlates with a decrease or absence of the other).
https://w3id.org/biolink/vocab/nutrient_of
http://www.w3.org/2000/01/rdf-schema#label
nutrient of - holds between a one or more chemical entities present in food, irrespective of nutritional value (i.e. could also be a contaminant or additive)
https://w3id.org/biolink/vocab/occurs_in
http://www.w3.org/2000/01/rdf-schema#label
occurs in - holds between a process and a material entity or site within which the process occurs
https://w3id.org/biolink/vocab/occurs_together_in_literature_with
http://www.w3.org/2000/01/rdf-schema#label
occurs together in literature with - holds between two entities where their co-occurrence is correlated by counts of publications in which both occur, using some threshold of occurrence as defined by the edge provider.
https://w3id.org/biolink/vocab/opposite_of
http://www.w3.org/2000/01/rdf-schema#label
opposite of - x is the opposite of y if there exists some distance metric M, and there exists no z such as M(x,z) <= M(x,y) or M(y,z) <= M(y,x). (This description is from RO. Needs to be rephrased).
https://w3id.org/biolink/vocab/orthologous_to
http://www.w3.org/2000/01/rdf-schema#label
orthologous to - a homology relationship between entities (typically genes) that diverged after a speciation event.
https://w3id.org/biolink/vocab/overlaps
http://www.w3.org/2000/01/rdf-schema#label
overlaps - holds between entities that overlap in their extents (materials or processes)
https://w3id.org/biolink/vocab/paralogous_to
http://www.w3.org/2000/01/rdf-schema#label
paralogous to - a homology relationship that holds between entities (typically genes) that diverged after a duplication event.
https://w3id.org/biolink/vocab/part_of
http://www.w3.org/2000/01/rdf-schema#label
part of - holds between parts and wholes (material entities or processes)
https://w3id.org/biolink/vocab/participates_in
http://www.w3.org/2000/01/rdf-schema#label
participates in - holds between a continuant and a process, where the continuant is somehow involved in the process
https://w3id.org/biolink/vocab/physically_interacts_with
http://www.w3.org/2000/01/rdf-schema#label
physically interacts with - holds between two entities that make physical contact as part of some interaction. does not imply a causal relationship.
https://w3id.org/biolink/vocab/positively_correlated_with
http://www.w3.org/2000/01/rdf-schema#label
positively correlated with - A relationship that holds between two concepts represented by variables for which a statistical correlation is demonstrated, wherein variable values move together in the same direction (i.e. increased in one or presence of one correlates with an increase or presence of the other).
https://w3id.org/biolink/vocab/preceded_by
http://www.w3.org/2000/01/rdf-schema#label
preceded by - holds between two processes, where the other is completed before the one begins
https://w3id.org/biolink/vocab/precedes
http://www.w3.org/2000/01/rdf-schema#label
precedes - holds between two processes, where one completes before the other begins
https://w3id.org/biolink/vocab/predisposes
http://www.w3.org/2000/01/rdf-schema#label
predisposes - holds between two entities where exposure to one entity increases the chance of developing the other
https://w3id.org/biolink/vocab/prevented_by
http://www.w3.org/2000/01/rdf-schema#label
prevented by - holds between a potential outcome of which the likelihood was reduced by the application or use of an entity.
https://w3id.org/biolink/vocab/prevents
http://www.w3.org/2000/01/rdf-schema#label
prevents - holds between an entity whose application or use reduces the likelihood of a potential outcome. Typically used to associate a chemical entity, exposure, activity, or medical intervention that can prevent the onset a disease or phenotypic feature.
https://w3id.org/biolink/vocab/produces
http://www.w3.org/2000/01/rdf-schema#label
produces - holds between a material entity and a product that is generated through the intentional actions or functioning of the material entity
https://w3id.org/biolink/vocab/provider
http://www.w3.org/2000/01/rdf-schema#label
provider - person, group, organization or project that provides a piece of information (e.g. a knowledge association).
https://w3id.org/biolink/vocab/publisher
http://www.w3.org/2000/01/rdf-schema#label
publisher - organization or person responsible for publishing books, periodicals, podcasts, games or software. Note that in the case of publications which have a containing "published in" node property, the publisher association may not be attached directly to the embedded child publication, but only made in between the parent's publication node and the publisher agent of the encompassing publication (e.g. only from the Journal referenced by the 'published_in' property of an journal article Publication node).
https://w3id.org/biolink/vocab/regulates
http://www.w3.org/2000/01/rdf-schema#label
regulates - A more specific form of affects, that implies the effect results from a biologically evolved control mechanism. Gene-affects-gene relationships will (almost) always involve regulation. Exogenous/environmental chemical-affects-gene relationships are not cases of regulation in this definition. Instead these would be captured using the 'affects' predicate, or possibly one of the 'interacts with' predicates depending on the nature of the interaction.
https://w3id.org/biolink/vocab/related_to
http://www.w3.org/2000/01/rdf-schema#label
related to - A relationship that is asserted between two named things
https://w3id.org/biolink/vocab/related_to_at_concept_level
http://www.w3.org/2000/01/rdf-schema#label
related to at concept level - Represents a relationship held between terminology components that describe the conceptual model of a domain.
https://w3id.org/biolink/vocab/related_to_at_instance_level
http://www.w3.org/2000/01/rdf-schema#label
related to at instance level - Represents a relationship held between two instances of a data classes. Much like an assertion component, in an ABox, these represent facts associated with the conceptual model.
https://w3id.org/biolink/vocab/response_affected_by
http://www.w3.org/2000/01/rdf-schema#label
response affected by - holds between two chemical entities where the susceptibility of a biological entity or system (e.g. an organism, cell, cellular component, macromolecular machine mixin, biological or pathological process) of one is affected by the action of the other.
https://w3id.org/biolink/vocab/same_as
http://www.w3.org/2000/01/rdf-schema#label
same as - holds between two entities that are considered equivalent to each other
https://w3id.org/biolink/vocab/similar_to
http://www.w3.org/2000/01/rdf-schema#label
similar to - holds between an entity and some other entity with similar features.
https://w3id.org/biolink/vocab/subclass_of
http://www.w3.org/2000/01/rdf-schema#label
subclass of - holds between two classes where the domain class is a specialization of the range class
https://w3id.org/biolink/vocab/superclass_of
http://www.w3.org/2000/01/rdf-schema#label
superclass of - holds between two classes where the domain class is a super class of the range class
https://w3id.org/biolink/vocab/target_for
http://www.w3.org/2000/01/rdf-schema#label
target for - A gene is a target of a disease when its products are druggable and when a drug interaction with the gene product could have a therapeutic effect
https://w3id.org/biolink/vocab/temporally_related_to
http://www.w3.org/2000/01/rdf-schema#label
temporally related to - holds between two entities with a temporal relationship
https://w3id.org/biolink/vocab/transcribed_from
http://www.w3.org/2000/01/rdf-schema#label
transcribed from - x is transcribed from y if and only if x is synthesized from template y
https://w3id.org/biolink/vocab/transcribed_to
http://www.w3.org/2000/01/rdf-schema#label
transcribed to - inverse of transcribed from
https://w3id.org/biolink/vocab/translates_to
http://www.w3.org/2000/01/rdf-schema#label
translates to - x (amino acid chain/polypeptide) is the ribosomal translation of y (transcript) if and only if a ribosome reads y (transcript) through a series of triplet codon-amino acid adaptor activities (GO:0030533) and produces x (amino acid chain/polypeptide)
https://w3id.org/biolink/vocab/translation_of
http://www.w3.org/2000/01/rdf-schema#label
translation of - inverse of translates to
https://w3id.org/biolink/vocab/treated_by
http://www.w3.org/2000/01/rdf-schema#label
treated by - holds between a disease or phenotypic feature and a therapeutic process or chemical entity that is used to treat the condition
https://w3id.org/biolink/vocab/treats
http://www.w3.org/2000/01/rdf-schema#label
treats - holds between a therapeutic procedure or chemical entity and a disease or phenotypic feature that it is used to treat
https://w3id.org/biolink/vocab/xenologous_to
http://www.w3.org/2000/01/rdf-schema#label
xenologous to - a homology relationship characterized by an interspecies (horizontal) transfer since the common ancestor.
http://purl.org/np/RAYiQ_XN8D2NiEG_nswWXZA-eXYSsgC14480c-Gvr_FVI#provenance
http://purl.org/np/RAYiQ_XN8D2NiEG_nswWXZA-eXYSsgC14480c-Gvr_FVI#assertion
http://www.w3.org/ns/prov#wasDerivedFrom
https://raw.githubusercontent.com/biolink/biolink-model/master/biolink-model.ttl
http://purl.org/np/RAYiQ_XN8D2NiEG_nswWXZA-eXYSsgC14480c-Gvr_FVI#pubinfo
http://purl.org/np/RAYiQ_XN8D2NiEG_nswWXZA-eXYSsgC14480c-Gvr_FVI#sig
http://purl.org/nanopub/x/hasAlgorithm
RSA
http://purl.org/np/RAYiQ_XN8D2NiEG_nswWXZA-eXYSsgC14480c-Gvr_FVI#sig
http://purl.org/nanopub/x/hasPublicKey
MIGfMA0GCSqGSIb3DQEBAQUAA4GNADCBiQKBgQCwUtewGCpT5vIfXYE1bmf/Uqu1ojqnWdYxv+ySO80ul8Gu7m8KoyPAwuvaPj0lvPtHrg000qMmkxzKhYknEjq8v7EerxZNYp5B3/3+5ZpuWOYAs78UnQVjbHSmDdmryr4D4VvvNIiUmd0yxci47dTFUj4DvfHnGd6hVe5+goqdcwIDAQAB
http://purl.org/np/RAYiQ_XN8D2NiEG_nswWXZA-eXYSsgC14480c-Gvr_FVI#sig
http://purl.org/nanopub/x/hasSignature
lRFIp+jMXN7pqDRainfW71AuyLi4cVFt8ZvoMR5clLoWFTaXX1LEH2pt0aytnz9toAiRFZtrHAplknp7vYju0u2HrXP7jlJnvS27+V0z+g6r+vLg8+Y22LbnIN9YVs8TdCRy0vhVgnKqLpYdxI3QWOybFzw6BO9h7zWPpEETV9M=
http://purl.org/np/RAYiQ_XN8D2NiEG_nswWXZA-eXYSsgC14480c-Gvr_FVI#sig
http://purl.org/nanopub/x/hasSignatureTarget
http://purl.org/np/RAYiQ_XN8D2NiEG_nswWXZA-eXYSsgC14480c-Gvr_FVI
http://purl.org/np/RAYiQ_XN8D2NiEG_nswWXZA-eXYSsgC14480c-Gvr_FVI
http://purl.org/dc/terms/creator
https://orcid.org/0000-0002-1267-0234