http://purl.org/np/RAYiQ_XN8D2NiEG_nswWXZA-eXYSsgC14480c-Gvr_FVI#Head http://purl.org/np/RAYiQ_XN8D2NiEG_nswWXZA-eXYSsgC14480c-Gvr_FVI http://www.nanopub.org/nschema#hasAssertion http://purl.org/np/RAYiQ_XN8D2NiEG_nswWXZA-eXYSsgC14480c-Gvr_FVI#assertion http://purl.org/np/RAYiQ_XN8D2NiEG_nswWXZA-eXYSsgC14480c-Gvr_FVI http://www.nanopub.org/nschema#hasProvenance http://purl.org/np/RAYiQ_XN8D2NiEG_nswWXZA-eXYSsgC14480c-Gvr_FVI#provenance http://purl.org/np/RAYiQ_XN8D2NiEG_nswWXZA-eXYSsgC14480c-Gvr_FVI http://www.nanopub.org/nschema#hasPublicationInfo http://purl.org/np/RAYiQ_XN8D2NiEG_nswWXZA-eXYSsgC14480c-Gvr_FVI#pubinfo http://purl.org/np/RAYiQ_XN8D2NiEG_nswWXZA-eXYSsgC14480c-Gvr_FVI http://www.w3.org/1999/02/22-rdf-syntax-ns#type http://www.nanopub.org/nschema#Nanopublication http://purl.org/np/RAYiQ_XN8D2NiEG_nswWXZA-eXYSsgC14480c-Gvr_FVI#assertion https://w3id.org/biolink/vocab/actively_involved_in http://www.w3.org/2000/01/rdf-schema#label actively involved in - holds between a continuant and a process or function, where the continuant actively contributes to part or all of the process or function it realizes https://w3id.org/biolink/vocab/affected_by http://www.w3.org/2000/01/rdf-schema#label affected by - describes an entity of which the state or quality is affected by another existing entity. https://w3id.org/biolink/vocab/affects http://www.w3.org/2000/01/rdf-schema#label affects - describes an entity that has a direct affect on the state or quality of another existing entity. Use of the 'affects' predicate implies that the affected entity already exists, unlike predicates such as 'affects risk for' and 'prevents, where the outcome is something that may or may not come to be. https://w3id.org/biolink/vocab/affects_risk_for http://www.w3.org/2000/01/rdf-schema#label affects risk for - holds between two entities where exposure to one entity alters the chance of developing the other https://w3id.org/biolink/vocab/ameliorates http://www.w3.org/2000/01/rdf-schema#label ameliorates - A relationship between an entity (e.g. a genotype, genetic variation, chemical, or environmental exposure, clinical intervention) and a condition (a phenotype or disease), where the presence of the entity reduces or eliminates some or all aspects of the condition. https://w3id.org/biolink/vocab/assesses http://www.w3.org/2000/01/rdf-schema#label assesses - The effect of a thing on a target was interrogated in some assay. A relationship between some perturbing agent (usually a chemical compound) and some target entity, where the affect of the perturbing agent on the target entity was interrogated in a particular assay. The target might be a particular protein, tissue, phenotype, whole organism, cell line, or other type of biological entity. https://w3id.org/biolink/vocab/associated_with http://www.w3.org/2000/01/rdf-schema#label associated with - Expresses a relationship between two named things where the relationship is typically generated statistically (though not in all cases), and is weaker than its child, 'correlated with', but stronger than its parent, 'related to'. This relationship holds between two concepts represented by variables for which a statistical dependence is demonstrated. E.g. the statement “Atrial Fibrillation (Afib) is associated with Myocardial Infarction (MI)” asserts that having Afib is not statistically independent from whether a patient will also have MI. Note that in Translator associations, the subject and object concepts may map exactly to the statistical variables, or represent related entities for which the variables serve as proxies in an Association (e.g. diseases, chemical entities or processes). https://w3id.org/biolink/vocab/associated_with_decreased_likelihood_of http://www.w3.org/2000/01/rdf-schema#label associated with decreased likelihood of - Expresses a relationship between two named things where the relationship is typically generated statistically and the state or fact of something is less probable. https://w3id.org/biolink/vocab/associated_with_increased_likelihood_of http://www.w3.org/2000/01/rdf-schema#label associated with increased likelihood of - Expresses a relationship between two named things where the relationship is typically generated statistically and the state or fact of something is more probable. https://w3id.org/biolink/vocab/associated_with_likelihood_of http://www.w3.org/2000/01/rdf-schema#label associated with likelihood of - A a relationship that holds between two concepts represented by variables for which a statistical dependence is demonstrated, wherein the state or value of one variable predicts the future state or value of the other. E.g. the statement “An Atrial Fibrillation (Afib) diagnosis is associated with likelihood of a Myocardial Infarction (MI) diagnosis” asserts that the state of having Afib is associated with an increased or decreased likelihood that a patient will later exhibit MI. https://w3id.org/biolink/vocab/associated_with_resistance_to http://www.w3.org/2000/01/rdf-schema#label associated with resistance to - A relation that holds between a named thing and a chemical that specifies that the change in the named thing is found to be associated with the degree of resistance to treatment by the chemical. https://w3id.org/biolink/vocab/associated_with_sensitivity_to http://www.w3.org/2000/01/rdf-schema#label associated with sensitivity to - A relation that holds between a named thing and a chemical that specifies that the change in the named thing is found to be associated with the degree of sensitivity to treatment by the chemical. https://w3id.org/biolink/vocab/author http://www.w3.org/2000/01/rdf-schema#label author - an instance of one (co-)creator primarily responsible for a written work https://w3id.org/biolink/vocab/binds http://www.w3.org/2000/01/rdf-schema#label binds - A causal mechanism mediated by the direct contact between effector and target chemical or biomolecular entity, which form a stable physical interaction. https://w3id.org/biolink/vocab/biomarker_for http://www.w3.org/2000/01/rdf-schema#label biomarker for - holds between a measurable chemical entity and a disease or phenotypic feature, where the entity is used as an indicator of the presence or state of the disease or feature. https://w3id.org/biolink/vocab/broad_match http://www.w3.org/2000/01/rdf-schema#label broad match - a list of terms from different schemas or terminology systems that have a broader, more general meaning. Broader terms are typically shown as parents in a hierarchy or tree. https://w3id.org/biolink/vocab/capable_of http://www.w3.org/2000/01/rdf-schema#label capable of - holds between a physical entity and process or function, where the continuant alone has the ability to carry out the process or function. https://w3id.org/biolink/vocab/caused_by http://www.w3.org/2000/01/rdf-schema#label caused by - holds between two entities where the occurrence, existence, or activity of one is caused by the occurrence or generation of the other https://w3id.org/biolink/vocab/causes http://www.w3.org/2000/01/rdf-schema#label causes - holds between two entities where the occurrence, existence, or activity of one causes the occurrence or generation of the other https://w3id.org/biolink/vocab/chemically_similar_to http://www.w3.org/2000/01/rdf-schema#label chemically similar to - holds between one small molecule entity and another that it approximates for purposes of scientific study, in virtue of its exhibiting similar features of the studied entity. https://w3id.org/biolink/vocab/close_match http://www.w3.org/2000/01/rdf-schema#label close match - a list of terms from different schemas or terminology systems that have a semantically similar but not strictly equivalent, broader, or narrower meaning. Such terms often describe the same general concept from different ontological perspectives (e.g. drug as a type of chemical entity versus drug as a type of role borne by a chemical entity). https://w3id.org/biolink/vocab/coexists_with http://www.w3.org/2000/01/rdf-schema#label coexists with - holds between two entities that are co-located in the same aggregate object, process, or spatio-temporal region https://w3id.org/biolink/vocab/coexpressed_with http://www.w3.org/2000/01/rdf-schema#label coexpressed with - holds between any two genes or gene products, in which both are generally expressed within a single defined experimental context. https://w3id.org/biolink/vocab/colocalizes_with http://www.w3.org/2000/01/rdf-schema#label colocalizes with - holds between two entities that are observed to be located in the same place. https://w3id.org/biolink/vocab/composed_primarily_of http://www.w3.org/2000/01/rdf-schema#label composed primarily of - x composed_primarily_of_y if:more than half of the mass of x is made from parts of y. https://w3id.org/biolink/vocab/condition_associated_with_gene http://www.w3.org/2000/01/rdf-schema#label condition associated with gene - holds between a gene and a disease or phenotypic feature that may be influenced, contribute to, or be correlated with the gene or its alleles/products https://w3id.org/biolink/vocab/contraindicated_for http://www.w3.org/2000/01/rdf-schema#label contraindicated for - Holds between a drug and a disease or phenotype, such that a person with that disease should not be treated with the drug. https://w3id.org/biolink/vocab/contributes_to http://www.w3.org/2000/01/rdf-schema#label contributes to - holds between two entities where the occurrence, existence, or activity of one causes or contributes to the occurrence or generation of the other https://w3id.org/biolink/vocab/correlated_with http://www.w3.org/2000/01/rdf-schema#label correlated with - A relationship that holds between two concepts represented by variables for which a statistical dependence is demonstrated using a correlation analysis method. https://w3id.org/biolink/vocab/decreased_likelihood_associated_with http://www.w3.org/2000/01/rdf-schema#label decreased likelihood associated with - https://w3id.org/biolink/vocab/decreases_amount_or_activity_of http://www.w3.org/2000/01/rdf-schema#label decreases amount or activity of - A grouping mixin to help with searching for all the predicates that decrease the amount or activity of the object. https://w3id.org/biolink/vocab/decreases_response_to http://www.w3.org/2000/01/rdf-schema#label decreases response to - holds between two chemical entities where the action or effect of one decreases the susceptibility of a biological entity or system (e.g. an organism, cell, cellular component, macromolecular machine mixin, biological or pathological process) to the other https://w3id.org/biolink/vocab/derives_from http://www.w3.org/2000/01/rdf-schema#label derives from - holds between two distinct material entities, the new entity and the old entity, in which the new entity begins to exist when the old entity ceases to exist, and the new entity inherits the significant portion of the matter of the old entity https://w3id.org/biolink/vocab/derives_into http://www.w3.org/2000/01/rdf-schema#label derives into - holds between two distinct material entities, the old entity and the new entity, in which the new entity begins to exist when the old entity ceases to exist, and the new entity inherits the significant portion of the matter of the old entity https://w3id.org/biolink/vocab/diagnoses http://www.w3.org/2000/01/rdf-schema#label diagnoses - a relationship that identifies the nature of (an illness or other problem) by examination of the symptoms. https://w3id.org/biolink/vocab/directly_physically_interacts_with http://www.w3.org/2000/01/rdf-schema#label directly physically interacts with - A causal mechanism mediated by a direct contact between the effector and target entities (this contact may be weak or strong, transient or stable). https://w3id.org/biolink/vocab/disease_has_basis_in http://www.w3.org/2000/01/rdf-schema#label disease has basis in - A relation that holds between a disease and an entity where the state of the entity has contribution to the disease. https://w3id.org/biolink/vocab/disease_has_location http://www.w3.org/2000/01/rdf-schema#label disease has location - A relationship between a disease and an anatomical entity where the disease has one or more features that are located in that entity. https://w3id.org/biolink/vocab/disrupted_by http://www.w3.org/2000/01/rdf-schema#label disrupted by - describes a relationship where the structure, function, or occurrence of one entity is degraded or interfered with by another. https://w3id.org/biolink/vocab/disrupts http://www.w3.org/2000/01/rdf-schema#label disrupts - describes a relationship where one entity degrades or interferes with the structure, function, or occurrence of another. https://w3id.org/biolink/vocab/editor http://www.w3.org/2000/01/rdf-schema#label editor - editor of a compiled work such as a book or a periodical (newspaper or an academic journal). Note that in the case of publications which have a containing "published in" node property, the editor association may not be attached directly to the embedded child publication, but only made in between the parent's publication node and the editorial agent of the encompassing publication (e.g. only from the Book referenced by the 'published_in' property of a book chapter Publication node). https://w3id.org/biolink/vocab/enabled_by http://www.w3.org/2000/01/rdf-schema#label enabled by - holds between a process and a physical entity, where the physical entity executes the process https://w3id.org/biolink/vocab/enables http://www.w3.org/2000/01/rdf-schema#label enables - holds between a physical entity and a process, where the physical entity executes the process https://w3id.org/biolink/vocab/exacerbates http://www.w3.org/2000/01/rdf-schema#label exacerbates - A relationship between an entity (e.g. a chemical, environmental exposure, or some form of genetic variation) and a condition (a phenotype or disease), where the presence of the entity worsens some or all aspects of the condition. https://w3id.org/biolink/vocab/exact_match http://www.w3.org/2000/01/rdf-schema#label exact match - holds between two entities that have strictly equivalent meanings, with a high degree of confidence https://w3id.org/biolink/vocab/expressed_in http://www.w3.org/2000/01/rdf-schema#label expressed in - holds between a gene or gene product and an anatomical entity in which it is expressed https://w3id.org/biolink/vocab/expresses http://www.w3.org/2000/01/rdf-schema#label expresses - holds between an anatomical entity and gene or gene product that is expressed there https://w3id.org/biolink/vocab/food_component_of http://www.w3.org/2000/01/rdf-schema#label food component of - holds between a one or more chemical entities present in food, irrespective of nutritional value (i.e. could also be a contaminant or additive) https://w3id.org/biolink/vocab/gene_associated_with_condition http://www.w3.org/2000/01/rdf-schema#label gene associated with condition - holds between a gene and a disease or phenotypic feature that the gene or its alleles/products may influence, contribute to, or correlate with https://w3id.org/biolink/vocab/gene_fusion_with http://www.w3.org/2000/01/rdf-schema#label gene fusion with - holds between two independent genes that have fused through translocation, interstitial deletion, or chromosomal inversion to form a new, hybrid gene. Fusion genes are often implicated in various neoplasms and cancers. https://w3id.org/biolink/vocab/gene_product_of http://www.w3.org/2000/01/rdf-schema#label gene product of - definition x has gene product of y if and only if y is a gene (SO:0000704) that participates in some gene expression process (GO:0010467) where the output of thatf process is either y or something that is ribosomally translated from x https://w3id.org/biolink/vocab/genetic_association http://www.w3.org/2000/01/rdf-schema#label genetic association - Co-occurrence of a certain allele of a genetic marker and the phenotype of interest in the same individuals at above-chance level https://w3id.org/biolink/vocab/genetic_neighborhood_of http://www.w3.org/2000/01/rdf-schema#label genetic neighborhood of - holds between two genes located nearby one another on a chromosome. https://w3id.org/biolink/vocab/genetically_interacts_with http://www.w3.org/2000/01/rdf-schema#label genetically interacts with - holds between two genes whose phenotypic effects are dependent on each other in some way - such that their combined phenotypic effects are the result of some interaction between the activity of their gene products. Examples include epistasis and synthetic lethality. https://w3id.org/biolink/vocab/has_active_ingredient http://www.w3.org/2000/01/rdf-schema#label has active ingredient - holds between a drug and a molecular entity in which the latter is a part of the former, and is a biologically active component https://w3id.org/biolink/vocab/has_adverse_event http://www.w3.org/2000/01/rdf-schema#label has adverse event - An untoward medical occurrence in a patient or clinical investigation subject that happens during treatment with a therapeutic agent. Adverse events may be caused by something other than the drug or therapy being given and may include abnormal laboratory finding, symptoms, or diseases temporally associated with the treatment, whether or not considered related to the treatment. Adverse events are unintended effects that occur when a medication is administered correctly. https://w3id.org/biolink/vocab/has_biomarker http://www.w3.org/2000/01/rdf-schema#label has biomarker - holds between a disease or phenotypic feature and a measurable chemical entity that is used as an indicator of the presence or state of the disease or feature. # metabolite https://w3id.org/biolink/vocab/has_chemical_role http://www.w3.org/2000/01/rdf-schema#label has chemical role - A role is particular behaviour which a chemical entity may exhibit. https://w3id.org/biolink/vocab/has_completed http://www.w3.org/2000/01/rdf-schema#label has completed - holds between an entity and a process that the entity is capable of and has completed https://w3id.org/biolink/vocab/has_excipient http://www.w3.org/2000/01/rdf-schema#label has excipient - holds between a drug and a molecular entities in which the latter is a part of the former, and is a biologically inactive component https://w3id.org/biolink/vocab/has_food_component http://www.w3.org/2000/01/rdf-schema#label has food component - holds between food and one or more chemical entities composing it, irrespective of nutritional value (i.e. could also be a contaminant or additive) https://w3id.org/biolink/vocab/has_gene_product http://www.w3.org/2000/01/rdf-schema#label has gene product - holds between a gene and a transcribed and/or translated product generated from it https://w3id.org/biolink/vocab/has_input http://www.w3.org/2000/01/rdf-schema#label has input - holds between a process and a continuant, where the continuant is an input into the process https://w3id.org/biolink/vocab/has_member http://www.w3.org/2000/01/rdf-schema#label has member - Defines a mereological relation between a collection and an item. https://w3id.org/biolink/vocab/has_metabolite http://www.w3.org/2000/01/rdf-schema#label has metabolite - holds between two molecular entities in which the second one is derived from the first one as a product of metabolism https://w3id.org/biolink/vocab/has_mode_of_inheritance http://www.w3.org/2000/01/rdf-schema#label has mode of inheritance - Relates a disease or phenotypic feature to its observed genetic segregation and assumed associated underlying DNA manifestation (i.e. autosomal, sex or mitochondrial chromosome). https://w3id.org/biolink/vocab/has_molecular_consequence http://www.w3.org/2000/01/rdf-schema#label has molecular consequence - connects a sequence variant to a class describing the molecular consequence. E.g. SO:0001583 https://w3id.org/biolink/vocab/has_not_completed http://www.w3.org/2000/01/rdf-schema#label has not completed - holds between an entity and a process that the entity is capable of, but has not completed https://w3id.org/biolink/vocab/has_nutrient http://www.w3.org/2000/01/rdf-schema#label has nutrient - one or more nutrients which are growth factors for a living organism https://w3id.org/biolink/vocab/has_output http://www.w3.org/2000/01/rdf-schema#label has output - holds between a process and a continuant, where the continuant is an output of the process https://w3id.org/biolink/vocab/has_part http://www.w3.org/2000/01/rdf-schema#label has part - holds between wholes and their parts (material entities or processes) https://w3id.org/biolink/vocab/has_participant http://www.w3.org/2000/01/rdf-schema#label has participant - holds between a process and a continuant, where the continuant is somehow involved in the process https://w3id.org/biolink/vocab/has_phenotype http://www.w3.org/2000/01/rdf-schema#label has phenotype - holds between a biological entity and a phenotype, where a phenotype is construed broadly as any kind of quality of an organism part, a collection of these qualities, or a change in quality or qualities (e.g. abnormally increased temperature). In SNOMEDCT, disorders with keyword 'characterized by' should translate into this predicate. https://w3id.org/biolink/vocab/has_plasma_membrane_part http://www.w3.org/2000/01/rdf-schema#label has plasma membrane part - Holds between a cell c and a protein complex or protein p if and only if that cell has as part a plasma_membrane[GO:0005886], and that plasma membrane has p as part. https://w3id.org/biolink/vocab/has_sequence_location http://www.w3.org/2000/01/rdf-schema#label has sequence location - holds between two nucleic acid entities when the subject can be localized in sequence coordinates on the object. For example, between an exon and a chromosome/contig. https://w3id.org/biolink/vocab/has_side_effect http://www.w3.org/2000/01/rdf-schema#label has side effect - An unintended, but predictable, secondary effect shown to be correlated with a therapeutic agent, drug or treatment. Side effects happen at normal, recommended doses or treatments, and are unrelated to the intended purpose of the medication. https://w3id.org/biolink/vocab/has_variant_part http://www.w3.org/2000/01/rdf-schema#label has variant part - holds between a nucleic acid entity and a nucleic acid entity that is a sub-component of it https://w3id.org/biolink/vocab/homologous_to http://www.w3.org/2000/01/rdf-schema#label homologous to - holds between two biological entities that have common evolutionary origin https://w3id.org/biolink/vocab/in_cell_population_with http://www.w3.org/2000/01/rdf-schema#label in cell population with - holds between two genes or gene products that are expressed in the same cell type or population https://w3id.org/biolink/vocab/in_complex_with http://www.w3.org/2000/01/rdf-schema#label in complex with - holds between two genes or gene products that are part of (or code for products that are part of) in the same macromolecular complex https://w3id.org/biolink/vocab/in_linkage_disequilibrium_with http://www.w3.org/2000/01/rdf-schema#label in linkage disequilibrium with - holds between two sequence variants, the presence of which are correlated in a population https://w3id.org/biolink/vocab/in_pathway_with http://www.w3.org/2000/01/rdf-schema#label in pathway with - holds between two genes or gene products that are part of in the same biological pathway https://w3id.org/biolink/vocab/in_taxon http://www.w3.org/2000/01/rdf-schema#label in taxon - connects an entity to its taxonomic classification. Only certain kinds of entities can be taxonomically classified; see 'thing with taxon' https://w3id.org/biolink/vocab/increased_likelihood_associated_with http://www.w3.org/2000/01/rdf-schema#label increased likelihood associated with - https://w3id.org/biolink/vocab/increases_amount_or_activity_of http://www.w3.org/2000/01/rdf-schema#label increases amount or activity of - A grouping mixin to help with searching for all the predicates that increase the amount or activity of the object. https://w3id.org/biolink/vocab/increases_response_to http://www.w3.org/2000/01/rdf-schema#label increases response to - holds between two chemical entities where the action or effect of one increases the susceptibility of a biological entity or system (e.g. an organism, cell, cellular component, macromolecular machine mixin, biological or pathological process) to the other https://w3id.org/biolink/vocab/interacts_with http://www.w3.org/2000/01/rdf-schema#label interacts with - holds between any two entities that directly or indirectly interact with each other https://w3id.org/biolink/vocab/is_active_ingredient_of http://www.w3.org/2000/01/rdf-schema#label is active ingredient of - holds between a molecular entity and a drug, in which the former is a part of the latter, and is a biologically active component https://w3id.org/biolink/vocab/is_excipient_of http://www.w3.org/2000/01/rdf-schema#label is excipient of - holds between a molecular entity and a drug in which the former is a part of the latter, and is a biologically inactive component https://w3id.org/biolink/vocab/is_frameshift_variant_of http://www.w3.org/2000/01/rdf-schema#label is frameshift variant of - holds between a sequence variant and a gene, such the sequence variant causes a disruption of the translational reading frame, because the number of nucleotides inserted or deleted is not a multiple of three. https://w3id.org/biolink/vocab/is_metabolite_of http://www.w3.org/2000/01/rdf-schema#label is metabolite of - holds between two molecular entities in which the first one is derived from the second one as a product of metabolism https://w3id.org/biolink/vocab/is_missense_variant_of http://www.w3.org/2000/01/rdf-schema#label is missense variant of - holds between a gene and a sequence variant, such the sequence variant results in a different amino acid sequence but where the length is preserved. https://w3id.org/biolink/vocab/is_nearby_variant_of http://www.w3.org/2000/01/rdf-schema#label is nearby variant of - holds between a sequence variant and a gene sequence that the variant is genomically close to. https://w3id.org/biolink/vocab/is_non_coding_variant_of http://www.w3.org/2000/01/rdf-schema#label is non coding variant of - holds between a sequence variant and a gene, where the variant does not affect the coding sequence https://w3id.org/biolink/vocab/is_nonsense_variant_of http://www.w3.org/2000/01/rdf-schema#label is nonsense variant of - holds between a sequence variant and a gene, such the sequence variant results in a premature stop codon https://w3id.org/biolink/vocab/is_sequence_variant_of http://www.w3.org/2000/01/rdf-schema#label is sequence variant of - holds between a sequence variant and a nucleic acid entity https://w3id.org/biolink/vocab/is_splice_site_variant_of http://www.w3.org/2000/01/rdf-schema#label is splice site variant of - holds between a sequence variant and a gene, such the sequence variant is in the canonical splice site of one of the gene's exons. https://w3id.org/biolink/vocab/is_synonymous_variant_of http://www.w3.org/2000/01/rdf-schema#label is synonymous variant of - holds between a sequence variant and a gene, such the sequence variant is in the coding sequence of the gene, but results in the same amino acid sequence https://w3id.org/biolink/vocab/likelihood_associated_with http://www.w3.org/2000/01/rdf-schema#label likelihood associated with - https://w3id.org/biolink/vocab/located_in http://www.w3.org/2000/01/rdf-schema#label located in - holds between a material entity and a material entity or site within which it is located (but of which it is not considered a part) https://w3id.org/biolink/vocab/location_of http://www.w3.org/2000/01/rdf-schema#label location of - holds between material entity or site and a material entity that is located within it (but not considered a part of it) https://w3id.org/biolink/vocab/manifestation_of http://www.w3.org/2000/01/rdf-schema#label manifestation of - that part of a phenomenon which is directly observable or visibly expressed, or which gives evidence to the underlying process; used in SemMedDB for linking things like dysfunctions and processes to some disease or syndrome https://w3id.org/biolink/vocab/member_of http://www.w3.org/2000/01/rdf-schema#label member of - Defines a mereological relation between a item and a collection. https://w3id.org/biolink/vocab/mentioned_by http://www.w3.org/2000/01/rdf-schema#label mentioned by - refers to is a relation between one named thing and the information content entity that it makes reference to. https://w3id.org/biolink/vocab/mentions http://www.w3.org/2000/01/rdf-schema#label mentions - refers to is a relation between one information content entity and the named thing that it makes reference to. https://w3id.org/biolink/vocab/model_of http://www.w3.org/2000/01/rdf-schema#label model of - holds between a thing and some other thing it approximates for purposes of scientific study, in virtue of its exhibiting similar features of the studied entity. https://w3id.org/biolink/vocab/molecular_activity_enabled_by http://www.w3.org/2000/01/rdf-schema#label molecular activity enabled by - The gene product, gene, or complex that catalyzes the reaction https://w3id.org/biolink/vocab/molecular_activity_has_input http://www.w3.org/2000/01/rdf-schema#label molecular activity has input - A chemical entity that is the input for the reaction https://w3id.org/biolink/vocab/molecular_activity_has_output http://www.w3.org/2000/01/rdf-schema#label molecular activity has output - A chemical entity that is the output for the reaction https://w3id.org/biolink/vocab/narrow_match http://www.w3.org/2000/01/rdf-schema#label narrow match - a list of terms from different schemas or terminology systems that have a narrower, more specific meaning. Narrower terms are typically shown as children in a hierarchy or tree. https://w3id.org/biolink/vocab/negatively_correlated_with http://www.w3.org/2000/01/rdf-schema#label negatively correlated with - A relationship that holds between two concepts represented by variables for which a statistical correlation is demonstrated, wherein variable values move in opposite directions (i.e. increased in one or presence of one correlates with a decrease or absence of the other). https://w3id.org/biolink/vocab/nutrient_of http://www.w3.org/2000/01/rdf-schema#label nutrient of - holds between a one or more chemical entities present in food, irrespective of nutritional value (i.e. could also be a contaminant or additive) https://w3id.org/biolink/vocab/occurs_in http://www.w3.org/2000/01/rdf-schema#label occurs in - holds between a process and a material entity or site within which the process occurs https://w3id.org/biolink/vocab/occurs_together_in_literature_with http://www.w3.org/2000/01/rdf-schema#label occurs together in literature with - holds between two entities where their co-occurrence is correlated by counts of publications in which both occur, using some threshold of occurrence as defined by the edge provider. https://w3id.org/biolink/vocab/opposite_of http://www.w3.org/2000/01/rdf-schema#label opposite of - x is the opposite of y if there exists some distance metric M, and there exists no z such as M(x,z) <= M(x,y) or M(y,z) <= M(y,x). (This description is from RO. Needs to be rephrased). https://w3id.org/biolink/vocab/orthologous_to http://www.w3.org/2000/01/rdf-schema#label orthologous to - a homology relationship between entities (typically genes) that diverged after a speciation event. https://w3id.org/biolink/vocab/overlaps http://www.w3.org/2000/01/rdf-schema#label overlaps - holds between entities that overlap in their extents (materials or processes) https://w3id.org/biolink/vocab/paralogous_to http://www.w3.org/2000/01/rdf-schema#label paralogous to - a homology relationship that holds between entities (typically genes) that diverged after a duplication event. https://w3id.org/biolink/vocab/part_of http://www.w3.org/2000/01/rdf-schema#label part of - holds between parts and wholes (material entities or processes) https://w3id.org/biolink/vocab/participates_in http://www.w3.org/2000/01/rdf-schema#label participates in - holds between a continuant and a process, where the continuant is somehow involved in the process https://w3id.org/biolink/vocab/physically_interacts_with http://www.w3.org/2000/01/rdf-schema#label physically interacts with - holds between two entities that make physical contact as part of some interaction. does not imply a causal relationship. https://w3id.org/biolink/vocab/positively_correlated_with http://www.w3.org/2000/01/rdf-schema#label positively correlated with - A relationship that holds between two concepts represented by variables for which a statistical correlation is demonstrated, wherein variable values move together in the same direction (i.e. increased in one or presence of one correlates with an increase or presence of the other). https://w3id.org/biolink/vocab/preceded_by http://www.w3.org/2000/01/rdf-schema#label preceded by - holds between two processes, where the other is completed before the one begins https://w3id.org/biolink/vocab/precedes http://www.w3.org/2000/01/rdf-schema#label precedes - holds between two processes, where one completes before the other begins https://w3id.org/biolink/vocab/predisposes http://www.w3.org/2000/01/rdf-schema#label predisposes - holds between two entities where exposure to one entity increases the chance of developing the other https://w3id.org/biolink/vocab/prevented_by http://www.w3.org/2000/01/rdf-schema#label prevented by - holds between a potential outcome of which the likelihood was reduced by the application or use of an entity. https://w3id.org/biolink/vocab/prevents http://www.w3.org/2000/01/rdf-schema#label prevents - holds between an entity whose application or use reduces the likelihood of a potential outcome. Typically used to associate a chemical entity, exposure, activity, or medical intervention that can prevent the onset a disease or phenotypic feature. https://w3id.org/biolink/vocab/produces http://www.w3.org/2000/01/rdf-schema#label produces - holds between a material entity and a product that is generated through the intentional actions or functioning of the material entity https://w3id.org/biolink/vocab/provider http://www.w3.org/2000/01/rdf-schema#label provider - person, group, organization or project that provides a piece of information (e.g. a knowledge association). https://w3id.org/biolink/vocab/publisher http://www.w3.org/2000/01/rdf-schema#label publisher - organization or person responsible for publishing books, periodicals, podcasts, games or software. Note that in the case of publications which have a containing "published in" node property, the publisher association may not be attached directly to the embedded child publication, but only made in between the parent's publication node and the publisher agent of the encompassing publication (e.g. only from the Journal referenced by the 'published_in' property of an journal article Publication node). https://w3id.org/biolink/vocab/regulates http://www.w3.org/2000/01/rdf-schema#label regulates - A more specific form of affects, that implies the effect results from a biologically evolved control mechanism. Gene-affects-gene relationships will (almost) always involve regulation. Exogenous/environmental chemical-affects-gene relationships are not cases of regulation in this definition. Instead these would be captured using the 'affects' predicate, or possibly one of the 'interacts with' predicates depending on the nature of the interaction. https://w3id.org/biolink/vocab/related_to http://www.w3.org/2000/01/rdf-schema#label related to - A relationship that is asserted between two named things https://w3id.org/biolink/vocab/related_to_at_concept_level http://www.w3.org/2000/01/rdf-schema#label related to at concept level - Represents a relationship held between terminology components that describe the conceptual model of a domain. https://w3id.org/biolink/vocab/related_to_at_instance_level http://www.w3.org/2000/01/rdf-schema#label related to at instance level - Represents a relationship held between two instances of a data classes. Much like an assertion component, in an ABox, these represent facts associated with the conceptual model. https://w3id.org/biolink/vocab/response_affected_by http://www.w3.org/2000/01/rdf-schema#label response affected by - holds between two chemical entities where the susceptibility of a biological entity or system (e.g. an organism, cell, cellular component, macromolecular machine mixin, biological or pathological process) of one is affected by the action of the other. https://w3id.org/biolink/vocab/same_as http://www.w3.org/2000/01/rdf-schema#label same as - holds between two entities that are considered equivalent to each other https://w3id.org/biolink/vocab/similar_to http://www.w3.org/2000/01/rdf-schema#label similar to - holds between an entity and some other entity with similar features. https://w3id.org/biolink/vocab/subclass_of http://www.w3.org/2000/01/rdf-schema#label subclass of - holds between two classes where the domain class is a specialization of the range class https://w3id.org/biolink/vocab/superclass_of http://www.w3.org/2000/01/rdf-schema#label superclass of - holds between two classes where the domain class is a super class of the range class https://w3id.org/biolink/vocab/target_for http://www.w3.org/2000/01/rdf-schema#label target for - A gene is a target of a disease when its products are druggable and when a drug interaction with the gene product could have a therapeutic effect https://w3id.org/biolink/vocab/temporally_related_to http://www.w3.org/2000/01/rdf-schema#label temporally related to - holds between two entities with a temporal relationship https://w3id.org/biolink/vocab/transcribed_from http://www.w3.org/2000/01/rdf-schema#label transcribed from - x is transcribed from y if and only if x is synthesized from template y https://w3id.org/biolink/vocab/transcribed_to http://www.w3.org/2000/01/rdf-schema#label transcribed to - inverse of transcribed from https://w3id.org/biolink/vocab/translates_to http://www.w3.org/2000/01/rdf-schema#label translates to - x (amino acid chain/polypeptide) is the ribosomal translation of y (transcript) if and only if a ribosome reads y (transcript) through a series of triplet codon-amino acid adaptor activities (GO:0030533) and produces x (amino acid chain/polypeptide) https://w3id.org/biolink/vocab/translation_of http://www.w3.org/2000/01/rdf-schema#label translation of - inverse of translates to https://w3id.org/biolink/vocab/treated_by http://www.w3.org/2000/01/rdf-schema#label treated by - holds between a disease or phenotypic feature and a therapeutic process or chemical entity that is used to treat the condition https://w3id.org/biolink/vocab/treats http://www.w3.org/2000/01/rdf-schema#label treats - holds between a therapeutic procedure or chemical entity and a disease or phenotypic feature that it is used to treat https://w3id.org/biolink/vocab/xenologous_to http://www.w3.org/2000/01/rdf-schema#label xenologous to - a homology relationship characterized by an interspecies (horizontal) transfer since the common ancestor. http://purl.org/np/RAYiQ_XN8D2NiEG_nswWXZA-eXYSsgC14480c-Gvr_FVI#provenance http://purl.org/np/RAYiQ_XN8D2NiEG_nswWXZA-eXYSsgC14480c-Gvr_FVI#assertion http://www.w3.org/ns/prov#wasDerivedFrom https://raw.githubusercontent.com/biolink/biolink-model/master/biolink-model.ttl http://purl.org/np/RAYiQ_XN8D2NiEG_nswWXZA-eXYSsgC14480c-Gvr_FVI#pubinfo http://purl.org/np/RAYiQ_XN8D2NiEG_nswWXZA-eXYSsgC14480c-Gvr_FVI#sig http://purl.org/nanopub/x/hasAlgorithm RSA http://purl.org/np/RAYiQ_XN8D2NiEG_nswWXZA-eXYSsgC14480c-Gvr_FVI#sig http://purl.org/nanopub/x/hasPublicKey MIGfMA0GCSqGSIb3DQEBAQUAA4GNADCBiQKBgQCwUtewGCpT5vIfXYE1bmf/Uqu1ojqnWdYxv+ySO80ul8Gu7m8KoyPAwuvaPj0lvPtHrg000qMmkxzKhYknEjq8v7EerxZNYp5B3/3+5ZpuWOYAs78UnQVjbHSmDdmryr4D4VvvNIiUmd0yxci47dTFUj4DvfHnGd6hVe5+goqdcwIDAQAB http://purl.org/np/RAYiQ_XN8D2NiEG_nswWXZA-eXYSsgC14480c-Gvr_FVI#sig http://purl.org/nanopub/x/hasSignature lRFIp+jMXN7pqDRainfW71AuyLi4cVFt8ZvoMR5clLoWFTaXX1LEH2pt0aytnz9toAiRFZtrHAplknp7vYju0u2HrXP7jlJnvS27+V0z+g6r+vLg8+Y22LbnIN9YVs8TdCRy0vhVgnKqLpYdxI3QWOybFzw6BO9h7zWPpEETV9M= http://purl.org/np/RAYiQ_XN8D2NiEG_nswWXZA-eXYSsgC14480c-Gvr_FVI#sig http://purl.org/nanopub/x/hasSignatureTarget http://purl.org/np/RAYiQ_XN8D2NiEG_nswWXZA-eXYSsgC14480c-Gvr_FVI http://purl.org/np/RAYiQ_XN8D2NiEG_nswWXZA-eXYSsgC14480c-Gvr_FVI http://purl.org/dc/terms/creator https://orcid.org/0000-0002-1267-0234