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Such a nanopublication expresses an association between an organism (normally identified as belonging to a certain taxon concept) and a nucleotide sequence (that can correspond to a gene or subunit of a gene), for example expressing that Sequence ID (INSDC / Genbank accession number or BOLD Process ID) identifies Organism X as belonging to a Taxon Concept Y.

" } ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@value" : "Expressing an association between an organism and a nucleotide sequence" } ], "https://w3id.org/np/o/ntemplate/hasDefaultProvenance" : [ { "@id" : "http://purl.org/np/RA2VjRiJ5AsNnPHDXuOqvsEJwTwqtj5rBb-OFkpPOzd9s" } ], "https://w3id.org/np/o/ntemplate/hasNanopubLabelPattern" : [ { "@value" : "Organism of ${taxonname} - ${relation} - ${nucleotidesequence}" } ], "https://w3id.org/np/o/ntemplate/hasStatement" : [ { "@id" : "http://purl.org/np/RA_6sehFOA9jqwTNMy58r0brFuGWjhmKdyEj2L1taAooM#st00" }, { "@id" : "http://purl.org/np/RA_6sehFOA9jqwTNMy58r0brFuGWjhmKdyEj2L1taAooM#st05" }, { "@id" : "http://purl.org/np/RA_6sehFOA9jqwTNMy58r0brFuGWjhmKdyEj2L1taAooM#st09" }, { "@id" : "http://purl.org/np/RA_6sehFOA9jqwTNMy58r0brFuGWjhmKdyEj2L1taAooM#st10" }, { "@id" : "http://purl.org/np/RA_6sehFOA9jqwTNMy58r0brFuGWjhmKdyEj2L1taAooM#st11" }, { "@id" : "http://purl.org/np/RA_6sehFOA9jqwTNMy58r0brFuGWjhmKdyEj2L1taAooM#st12" }, { "@id" : "http://purl.org/np/RA_6sehFOA9jqwTNMy58r0brFuGWjhmKdyEj2L1taAooM#st20" }, { "@id" : "http://purl.org/np/RA_6sehFOA9jqwTNMy58r0brFuGWjhmKdyEj2L1taAooM#st25" }, { "@id" : "http://purl.org/np/RA_6sehFOA9jqwTNMy58r0brFuGWjhmKdyEj2L1taAooM#st30" }, { "@id" : "http://purl.org/np/RA_6sehFOA9jqwTNMy58r0brFuGWjhmKdyEj2L1taAooM#st81" }, { "@id" : "http://purl.org/np/RA_6sehFOA9jqwTNMy58r0brFuGWjhmKdyEj2L1taAooM#st82" }, { "@id" : "http://purl.org/np/RA_6sehFOA9jqwTNMy58r0brFuGWjhmKdyEj2L1taAooM#st85" }, { "@id" : "http://purl.org/np/RA_6sehFOA9jqwTNMy58r0brFuGWjhmKdyEj2L1taAooM#st90" } ], "https://w3id.org/np/o/ntemplate/hasTag" : [ { "@value" : "Biodiversity" } ] }, { "@id" : "http://purl.org/np/RA_6sehFOA9jqwTNMy58r0brFuGWjhmKdyEj2L1taAooM#association", "@type" : [ "https://w3id.org/np/o/ntemplate/IntroducedResource", "https://w3id.org/np/o/ntemplate/LocalResource" ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@value" : "this association" } ] }, { "@id" : "http://purl.org/np/RA_6sehFOA9jqwTNMy58r0brFuGWjhmKdyEj2L1taAooM#comment", "@type" : [ "https://w3id.org/np/o/ntemplate/LongLiteralPlaceholder" ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@value" : "short explanation related to the above statement" } ] }, { "@id" : "http://purl.org/np/RA_6sehFOA9jqwTNMy58r0brFuGWjhmKdyEj2L1taAooM#coordinates", "@type" : [ "https://w3id.org/np/o/ntemplate/LiteralPlaceholder" ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@value" : "lat/long coordinates in format like '+47.37+8.54' or with altitude '+47.37+8.54+410.5'" } ], "https://w3id.org/np/o/ntemplate/hasRegex" : [ { "@value" : "[+-][0-9]+(\\.[0-9]+)?[+-][0-9]+(\\.[0-9]+)?([+-][0-9]+(\\.[0-9]+)?)?" } ] }, { "@id" : "http://purl.org/np/RA_6sehFOA9jqwTNMy58r0brFuGWjhmKdyEj2L1taAooM#lifecyclestage", "@type" : [ "https://w3id.org/np/o/ntemplate/RestrictedChoicePlaceholder" ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@value" : "select the life cycle stage of the organism; leave blank if unknown" } ], "https://w3id.org/np/o/ntemplate/possibleValuesFrom" : [ { "@id" : "http://purl.org/np/RAVZS2MV-siFEqsgFTtgSoKA5qJkp7r1nM_n-MqPkvgdE" } ] }, { "@id" : "http://purl.org/np/RA_6sehFOA9jqwTNMy58r0brFuGWjhmKdyEj2L1taAooM#nucleotidesequence", "@type" : [ "https://w3id.org/np/o/ntemplate/ExternalUriPlaceholder" ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@value" : "INSDC / Genbank accession number (e.g. https://www.ncbi.nlm.nih.gov/nuccore/...)" } ] }, { "@id" : "http://purl.org/np/RA_6sehFOA9jqwTNMy58r0brFuGWjhmKdyEj2L1taAooM#occurrence", "@type" : [ "https://w3id.org/np/o/ntemplate/ExternalUriPlaceholder" ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@value" : "occurrence URI from GBIF (https://www.gbif.org/occurrence/...) or iDigBio, BOLD, PlutoF, etc." } ] }, { "@id" : "http://purl.org/np/RA_6sehFOA9jqwTNMy58r0brFuGWjhmKdyEj2L1taAooM#organism", "@type" : [ "https://w3id.org/np/o/ntemplate/LocalResource" ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@value" : "the organism" } ] }, { "@id" : "http://purl.org/np/RA_6sehFOA9jqwTNMy58r0brFuGWjhmKdyEj2L1taAooM#organismAlt", "@type" : [ "https://w3id.org/np/o/ntemplate/ExternalUriPlaceholder" ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@value" : "any existing URI identifier of organism (e.g. of digital collection specimen or observation in nature)" } ] }, { "@id" : "http://purl.org/np/RA_6sehFOA9jqwTNMy58r0brFuGWjhmKdyEj2L1taAooM#relation", "@type" : [ "https://w3id.org/np/o/ntemplate/RestrictedChoicePlaceholder" ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@value" : "the relation between the organism and the nucleotide sequence" } ], "https://w3id.org/np/o/ntemplate/hasDefaultValue" : [ { "@id" : "https://w3id.org/kpxl/biodiv/terms/hasObservedNucleotideSequence" } ], "https://w3id.org/np/o/ntemplate/possibleValue" : [ { "@id" : "https://w3id.org/kpxl/biodiv/terms/hasAssembledNucleotideSequence" }, { "@id" : 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"https://w3id.org/biolink/vocab/predicate" } ], "http://www.w3.org/1999/02/22-rdf-syntax-ns#subject" : [ { "@id" : "http://purl.org/np/RA_6sehFOA9jqwTNMy58r0brFuGWjhmKdyEj2L1taAooM#association" } ] }, { "@id" : "http://purl.org/np/RA_6sehFOA9jqwTNMy58r0brFuGWjhmKdyEj2L1taAooM#st09", "http://www.w3.org/1999/02/22-rdf-syntax-ns#object" : [ { "@id" : "http://purl.org/np/RA_6sehFOA9jqwTNMy58r0brFuGWjhmKdyEj2L1taAooM#organism" } ], "http://www.w3.org/1999/02/22-rdf-syntax-ns#predicate" : [ { "@id" : "https://w3id.org/biolink/vocab/subject" } ], "http://www.w3.org/1999/02/22-rdf-syntax-ns#subject" : [ { "@id" : "http://purl.org/np/RA_6sehFOA9jqwTNMy58r0brFuGWjhmKdyEj2L1taAooM#association" } ] }, { "@id" : "http://purl.org/np/RA_6sehFOA9jqwTNMy58r0brFuGWjhmKdyEj2L1taAooM#st10", "http://www.w3.org/1999/02/22-rdf-syntax-ns#object" : [ { "@id" : "http://purl.org/np/RA_6sehFOA9jqwTNMy58r0brFuGWjhmKdyEj2L1taAooM#taxon" } ], "http://www.w3.org/1999/02/22-rdf-syntax-ns#predicate" : [ { "@id" : 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