@prefix this: . @prefix sub: . @prefix np: . @prefix dct: . @prefix rdf: . @prefix nt: . @prefix npx: . @prefix xsd: . @prefix rdfs: . @prefix orcid: . @prefix prov: . sub:Head { this: np:hasAssertion sub:assertion; np:hasProvenance sub:provenance; np:hasPublicationInfo sub:pubinfo; a np:Nanopublication . } sub:assertion { sub:assertion dct:description """

This nanopublication makes a statement that in the context of a thing of a certain type (e.g. a mouse), another thing of a certain type (e.g. a gene) tends to have a relation (such as causing) to another thing of a certain type (e.g. a disease) in the same context.

Note that the context is not a reference to a general topic or field. It denotes the class for the context in which the relations happen. If each relation is happening in a human, for example, such as a certain condition leading to a certain symptom, then the context class should be 'human'.

The technical background of the super-pattern can be found in this publication.

"""; a nt:AssertionTemplate; rdfs:label "Expressing a general claim with a super-pattern"; nt:hasStatement sub:st0, sub:st1, sub:st2, sub:st3, sub:st4, sub:st5, sub:st6; nt:hasTag "Claims" . sub:contextClass a nt:GuidedChoicePlaceholder; rdfs:label "URI of the context class"; nt:possibleValue ; nt:possibleValuesFromApi "http://purl.org/nanopub/api/find_signed_things?type=http%3A%2F%2Fwww.w3.org%2F2002%2F07%2Fowl%23Class&searchterm=", "https://www.wikidata.org/w/api.php?action=wbsearchentities&language=en&format=json&limit=5&search=" . sub:label a nt:LiteralPlaceholder; rdfs:label "informal label or text for the whole superpattern instance" . sub:objectClass a nt:GuidedChoicePlaceholder; rdfs:label "URI of the object class"; nt:possibleValuesFromApi "http://purl.org/nanopub/api/find_signed_things?type=http%3A%2F%2Fwww.w3.org%2F2002%2F07%2Fowl%23Class&searchterm=", "https://www.wikidata.org/w/api.php?action=wbsearchentities&language=en&format=json&limit=5&search=" . sub:qualifier a nt:RestrictedChoicePlaceholder; rdfs:label "URI of the qualifier"; nt:possibleValue , , , , , , , , , , , , , , , , , , , . sub:relation a nt:RestrictedChoicePlaceholder; rdfs:label "URI of the relation type"; nt:possibleValue , , , , , , , , , , , , , , , , , , , , , . sub:spi a nt:IntroducedResource, nt:LocalResource; rdfs:label "SPI: - this super-pattern instance" . sub:st0 rdf:object ; rdf:predicate rdf:type; rdf:subject sub:spi . sub:st1 rdf:object sub:label; rdf:predicate rdfs:label; rdf:subject sub:spi . sub:st2 rdf:object sub:contextClass; rdf:predicate ; rdf:subject sub:spi . sub:st3 rdf:object sub:subjectClass; rdf:predicate ; rdf:subject sub:spi . sub:st4 rdf:object sub:qualifier; rdf:predicate ; rdf:subject sub:spi . sub:st5 rdf:object sub:relation; rdf:predicate ; rdf:subject sub:spi . sub:st6 rdf:object sub:objectClass; rdf:predicate ; rdf:subject sub:spi . sub:subjectClass a nt:GuidedChoicePlaceholder; rdfs:label "URI of the subject class"; nt:possibleValuesFromApi "http://purl.org/nanopub/api/find_signed_things?type=http%3A%2F%2Fwww.w3.org%2F2002%2F07%2Fowl%23Class&searchterm=", "https://www.wikidata.org/w/api.php?action=wbsearchentities&language=en&format=json&limit=5&search=" . rdf:type rdfs:label "This is a - links a thing (left) to a class it belongs (right)" . rdfs:label rdfs:label "Informally, it can be shown as - links a formal identifier (left) to a human-readable name (right)" . rdfs:label "super-pattern instance - a statement that conforms to the super-pattern" . rdfs:label "universal context (i.e. no context restriction) - The universal context is used in a super-pattern when the subject and object instances of a super-pattern statement happen outside of any obvious context entities (such as the context of \"organism\" in the case of genes affecting diseases)" . rdfs:label "affects - the subject instance positively or negatively affects the intensity or frequency of the activity instance of the object" . rdfs:label "always - true in 100% of cases" . rdfs:label "can always - can be made true in 100% cases" . rdfs:label "can frequently not - can be made true in at most 90% of cases" . rdfs:label "can frequently - can be made true in at least 10% of cases" . rdfs:label "can generally not - can be made true in at most 10% of cases" . rdfs:label "can generally - can be made true in at least 90% of cases" . rdfs:label "can mostly not - can be made true in at most 50% of cases" . rdfs:label "can mostly - can be made true in at least 50% of cases" . rdfs:label "can never - can be made true in 0% of cases" . rdfs:label "can sometimes not - can be made true in at most 99.9% of cases" . rdfs:label "can sometimes - can be made true in at least 0.1% of cases" . rdfs:label "causes - the subject instance causes the existence of the object instance" . rdfs:label "contributes to - the subject instance positively affects the intensity or frequency of the activity instance of the object" . rdfs:label "co-occurs with - the subject instance is close to the object instance in terms of space and time" . rdfs:label "decreases - the subject instance causes the value of the object instance to decrease" . rdfs:label "enables - the subject instance causes the activity instance of the object to happen" . rdfs:label "follows - the object instance came into existence before the subject instance" . rdfs:label "frequently not - true in at most 90% of cases" . rdfs:label "frequently - true in at least 10% of cases" . rdfs:label "generally not - true in at most 10% of cases" . rdfs:label "generally - true in at least 90% of the cases" . rdfs:label "In the context of all things of type - specifies the context class (right) for the given super-pattern instance (left)" . rdfs:label "has different value from - the quantifiable subject instance has a value that is different from the quantifiable object instance" . rdfs:label "has larger value than - the quantifiable subject instance has a larger value than the quantifiable object instance" . rdfs:label "... to things of type - specifies the object class (right) for the given super-pattern instance (left)" . rdfs:label "... (qualifier) - specifies the qualifier (right) for the given super-pattern statement (left)" . rdfs:label "... have a relation of type - specifies the relation type (right) for the given super-pattern statement (left)" . rdfs:label "has same value as - the quantifiable subject instance has the same value as the quantifiable object instance" . rdfs:label "has similar value as - the quantifiable subject instance has a similar value as the quantifiable object instance" . rdfs:label "has smaller value than - the quantifiable subject instance has a smaller value than the quantifiable object instance" . rdfs:label "... things of type - specifies the subject class (right) for the given super-pattern instance (left)" . rdfs:label "includes - the subject instance spatiotemporally includes the object instance" . rdfs:label "increases - the subject instance causes the value of the object instance to increase" . rdfs:label "inhibits - the subject instance negatively affects the intensity or frequency of the activity instance of the object" . rdfs:label "is caused by - the existence of the subject instance is caused by the object instance" . rdfs:label "is followed by - the subject instance comes into existence before the object instance" . rdfs:label "is included in - the object instance spatiotemporally includes the subject instance" . rdfs:label "is necessary and sufficient for - the subject instance causes the existence of the object instance, which would not come to exist if the subject did not exist" . rdfs:label "is same as - the subject instance and the object instance are the same individual" . rdfs:label "mostly not - true in at most 50% of cases" . rdfs:label "mostly - true in at least 50% of cases" . rdfs:label "never - true in 0% of cases" . rdfs:label "prevents - the subject instance causes the activity instance of the object not to happen" . rdfs:label "requires - the subject instance would not come to exist if the object instance did not exist" . rdfs:label "sometimes not - true in at most 99.9% of cases" . rdfs:label "sometimes - true in at least 0.1% of cases" . } sub:provenance { sub:assertion prov:wasAttributedTo orcid:0000-0002-1267-0234 . } sub:pubinfo { sub:sig npx:hasAlgorithm "RSA"; npx:hasPublicKey "MIGfMA0GCSqGSIb3DQEBAQUAA4GNADCBiQKBgQCwUtewGCpT5vIfXYE1bmf/Uqu1ojqnWdYxv+ySO80ul8Gu7m8KoyPAwuvaPj0lvPtHrg000qMmkxzKhYknEjq8v7EerxZNYp5B3/3+5ZpuWOYAs78UnQVjbHSmDdmryr4D4VvvNIiUmd0yxci47dTFUj4DvfHnGd6hVe5+goqdcwIDAQAB"; npx:hasSignature "rPb9JbS8XzTtI6DDF9cu63cEwddTQ/jTWI743EzDZ7+fKu8M6tKMnzgCkv4RZj/mn/fWVsm+vJiW54UgYGKRsRPKFEFhwk9U4DBZ/eAwgjqnGkEUKbiBNT6vE8T0+igii+QdmPpkFmJQ6wDjJo92ZGh7kofmJdyOiP6TkZh95l8="; npx:hasSignatureTarget this: . this: dct:created "2023-03-01T09:30:43.959+01:00"^^xsd:dateTime; dct:creator orcid:0000-0002-1267-0234; npx:supersedes ; nt:wasCreatedFromProvenanceTemplate ; nt:wasCreatedFromPubinfoTemplate , ; nt:wasCreatedFromTemplate . }